The map of sprat relative abundance is mainly based on Baltic International acoustic surveys (BIAS), years 2011-2016, (ICES WGBIFS reports), reported as millions of sprat per ICES rectangle. The BIAS surveys cover almost the whole area where sprat is commonly encountered. Outside BIAS area, sprat landings data was used to complement the data. For ICES rectangles surveyed by BIAS, values shown are the mean values per ICES rectangle based on BIAS data, average for 2011-2016. For ICES rectangles not surveyed by BIAS, values are calculated as: MAX-value x Weighting factor. The weighting factor is specific to each ICES rectangle, calculated as the ratio between the commercial landings in that rectangle and the commercial landings in the ICES rectangle with highest landings (based on averages for 2011-2015). MAX-value = millions of sprat according to BIAS in the ICES rectangle with highest landings. ICES rectangles outside the BIAS survey area with no reported sprat landings were given the value 0. The abundance values / ICES rectangle were divided by the area of the rectangle to obtain values per 1km2, and then converted to 1 km x 1km grid cells. Values were first log transformed and then normalised.

Pressure layer combines all human activities that cause changes to hydrological conditions. The human activities were presented as point data which were given spatial extents (given below). The pressure value was given as the proportion of the grid cell under the pressure. The following human activities were combined into the changes to hydrological conditions layer; - Hydropower dams (a 1km2 grid cell in the river estuary was selected) - Water course modification (1 km) - Wind turbines (operational, 0.3 km, linear decline) - Oil platforms (0.5 km, linear decline) The human activity datasets were first processed separately covering the whole Baltic Sea and then summed together and overlapping areas were dissolved to remove double counting. Attenuation gradients are assigned to each layer as described above. Area effected decreases when distance from avtivity increases. Layer was normalized.

The extraction of herring data set is based on: 1. http://metadata.helcom.fi/geonetwork/srv/eng/catalog.search#/metadata/a3b67a55-7c1e-469e-b692-58c4e7b79279 for years 2011-2016 reported per ICES statistical rectangles (tonnes / ICES rectangle). Landing values were redistributed within each ICES rectangle by the c-square fishing effort data provided by ICES (all gears, 2011-2013). Tonnes / km² was calculated and the results were converted to 1 km x 1 km grid cells. The layer was log-transformed and normalised to produce the final pressure layer on extraction of herring. Please see "lineage" section below for further details on attributes, data source, data processing, etc.

Distribution of blue mussel based on data submission by HELCOM contracting parties. Mainly pointwise occurrences of Mytilus spp. were submitted, originally gathered in national mapping and monitoring campaigns, or for scientific research. Point data from Poland was digitized based on Polish Marine Atlas. From Lithuania, a polygon delineating reefs was used to present Mytilus occurrence. For Germany, point data was complemented with a model describing Mytilus biomass in the German marine area (Darr et al. 2014), where predicted biomasses > 1g dw/ m2 were included as presence. From Estonian waters, a predictive model was used (200m resolution), that was converted to presence/absence using minimized difference threshold (MDT) criteria. All data (points, polygon and the raster presenting predicted presence of Mytilus) were generalized to 5km x 5km grid cells.

Distribution of eelgrass based on data submission by HELCOM contracting parties. Mainly pointwise occurrences of eelgrass were submitted, originally gathered in national mapping and monitoring campaigns, or for scientific research. Polygon data from Puck Bay (Poland) was digitized based on Polish Marine Atlas and Orlowo cliff area was added based on expert knowledge. From Estonian waters, a predictive model was used (200m resolution), that was converted to presence/absence using minimized difference threshold (MDT) criteria. All data (points, polygon and the raster presenting predicted presence of eelgrass in the Estonian waters) were generalized to 5km x 5km grid cells.

The fishing intensity map displays data provided in C-square (0.05 x 0.05 degrees) converted to 1x1 km raster 2011-2016. The value of raster cell is subsurface swept area ratio. The data does not cover Russian waters.

Data shows the extent of land claim (permanent or temporary establishments of the sea) and the type of the construction. The data was made available by HELCOM Contracting Parties in response to data request. The data was received from Denmark, Finland, Sweden and Poland. The activity was declared as not relevant in Germany, Estonia, Latvia and Lithuanian. From Russia no data was reported. Attribute specification and units: Country: Country Type: Type of construction (land claim) Type_spec: More specified information about the type of land claim Year: Year of construction Estimated: Estimated year of construction from the identification information (environmental permit) given by the country in question Length: Length of the land reclamation (m) Area: Area (km2) of the land claim X_lon: Original Longitude coordinate point (for the data that has been transformed from points into lines) Y_Lat: Original latitude coordinate point (for the data that has been transformed from points into lines)

Data set represents dredging activities around the Baltic Sea. The dataset contains information about the dredging activity and for some the type (capital, maintenance) and the year of activity as reported by HELCOM Contracting Parties in response to data request. The dredging data is missing from Denmark.

The dataset contains total landings of cod for years 2011-2016 reported per ICES statistical rectangles (tonnes / ICES rectangle) under EU Joint Research Centre’s data collection framework for fisheries data. Russian data extracted from ICES annual reports.

The map of herring relative abundance is mainly based on Baltic International acoustic surveys (BIAS), years 2011-2016 (ICES WGBIFS reports), reported as millions of herring / ICES rectangle. Also herring landings data were used to complement the data. For ICES rectangles surveyed by BIAS, values shown are the mean values per ICES rectangle based on BIAS data, average for 2011-2016. For ICES rectangles not surveyed by BIAS, values are calculated as: MAX-value x Weighting factor. The weighting factor is specific to each ICES rectangle, calculated as the ratio between the commercial landings in that rectangle and the commercial landings in the ICES rectangle with highest landings (based on averages for 2011-2016). MAX-value = millions of herring according to BIAS in the ICES rectangle with highest landings. ICES rectangles outside the BIAS survey area with no reported herring landings were given the value 0. The relative abundance values in each ICES rectangle were divided by the area of the rectangle to obtain values per 1km2. If the values in small coastal ICES rectangles (outside BIAS area) became unrealistically large due to high herring landings, the value of the neighboring rectangle was given. The final layer was converted to 1 km x 1km grid cells. Values were first log transformed and normalized.