This dataset represents the underlying water data on core indicator TBT and imposex. The core indicator evaluates the status of the marine environment based on concentrations of the tributyltin (TBT) and its breakdown products dibutyltin (DBT) and monobutyltin (MBT) in the Baltic Sea; in water, biota (mussels, marine gastropods) and sediments. Imposex effects of TBT on marine gastropods are used as another source of data on TBT. Quantitative thresholds are used to evaluate if core indicators status is Achieve, Fail or Not assessed. Good status is achieved when the concentrations of TBT are below the threshold value. This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas and division of the coastal areas by WFD water types or water bodies). Attribute information: "region" = MIME subregion "country" = country "station" = Unique text that identifies the station "stationNam" = name for the station "determinan" = determinant parameter (TBTIN = tributyltin) "detGroup" = the grouping of determinands used to display the results "filtered" = Filtered or unfiltered water sample used in analysis "_shape" = shape used to map assessment results "colour" = colour used to map assessment results "l3area" = HELCOM assessment unit on scale 3 "l4area" = HELCOM assessment unit on scale 4 "nyall" = total number of years of data "nyfit" = number of years of data used in the assessment "nypos" = number of years with at least one measurement above the limit of detection "lastyear" = most recent year of data "prtrend" = the significance of the change over the most recent 20 years; for the assessment conducted in November 2017 and published in June 2018, this is the period 1996-2016 "rtrend" = annual ‘linear’ change over the most recent 20 years "meanLY" = fitted value in last monitoring year "clLY" = upper one-sided 95% confidence limit on fitted value in last monitoring year "EQS" = Threshold value "EQSdiff" = difference between clLY and EQS "EQSbelow" = whether the mean value in the last monitoring year is significantly below EQS

This indicator evaluates the eutrophication status of the Baltic Sea area based on annual total phosphorus concentration. The measured average total phosphorus on in-situ measurements from oceanographic monitoring data for 2011-2016 (µmol/l), surface water (0-10 m). More detailed description on methodology can be found at http://www.helcom.fi/baltic-sea-trends/indicators/total-phosphorus-(tp)/ and http://www.helcom.fi/Documents/Eutrophication%20assessment%20manual.pdf This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 open sea sub-basins and division of coastal areas to WFD water types or water bodies). The open sea areas have been assessed based on HELCOM Monitoring data and results for coastal areas are based on national WFD results. Some of the open sea areas have not been assessed due to lack of commonly agreed threshold value. Attribute information: “HELCOM_ID” = Code of the HELCOM scale 4 assessment unit "Country" = Country/ Opensea "level_2" = Name of the HELCOM scale 2 assessment unit "Name" = Name of the HELCOM scale 4 assessment unit” "Area (km2)" = Area of the HELCOM scale 2 assessment unit "Indicator" = Name of indicator “Season” = Season of the indicator (Summer = June-September) “Period” = Assessment unit period start and end year (20112016 = 2011 – 2016) "Indicator value (ES)" = Indicator value calculated for the assessment unit "Standard deviation (STD)" = Standard deviation of data used for calculating ES "Number of samples " = Number of samples "Thershold value (ET)" = Commonly agreed thershold value "Ratio between ES and ET (ER)" = Ratio between ES and ET (in case of indicator with positive response to eutrophication) "ES_SCORE” = Confidence based on the data used for calculating ES "ET_SCORE” = Confidence of target-setting procedure "I_SCORE” = Confidence (%) = average of ES-Score and ET-Score "Indicator Weight" = Indicator Weight in integrated eutrophication assessment “Status” = Status of the indicator (“Good”, “Not good”, “Not assessed” or "Not applicable") “Confidence” = Confidence of result based on I-SCORE (“High”, “Moderate” or “Low”) "AULEVEL" = Assessment unit level used for the indicator "Winter status" = Status of the indicator (“Achieve”, “Fail” or “Not assessed”) in winter "Winter ratio between ES and ET (ER)" = Ratio between ES and ET (in case of indicator with positive response to eutrophication) in winter "Winter indicator value (ES)" = Commonly agreed thershold value in winter

This core indicator evaluates the status of the marine environment based on concentrations of heavy metal Mercury (Hg) in fish muscle. Quantitative threshold value is used to evaluate if core indicators status is "Achieve", "Fail" or "Not assessed". Threshold values are based on Environmental quality standards (EQS), defined at EU level for substances included in the priority list under the Water Framework Directive. This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas and division of the coastal areas by WFD water types or water bodies). Attribute information: "OBJECTID" = Object identification "HELCOM_ID" = Code of the HELCOM scale 4 assessment unit "Descriptio" = Description of the HELCOM scale 4 assessment unit "Contamination ratio" = Contamination ratio in biota for this substance "STATUS" = Status of the indicator in biota, which in this case is also the overall Status, one-out-all-out (“Achieve”, “Fail” or “Not assessed”) "AULEVEL" = Assessment unit level used for the indicator

This core indicator evaluates the status of the marine environment based on concentrations of heavy metal cadmium (Cd) in seawater, biota and sediments. Quantitative thresholds are used to evaluate if core indicators status is "Achieve", "Fail" or "Not assessed". Threshold values are based on Environmental quality standards (EQS), defined at EU level for substances included in the priority list under the Water Framework Directive. This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas and division of the coastal areas by WFD water types or water bodies). Attribute information: "OBJECTID" = Object identification "HELCOM_ID" = Code of the HELCOM scale 4 assessment unit "Descriptio" = Description of the HELCOM scale 4 assessment unit "AULEVEL" = Assessment unit level used for the indicator "Contamination ratio in biota" = Contamination ratio in biota for this substance "Status in biota" = Status of the indicator in biota (“Achieve”, “Fail” or “Not assessed”) "Contamination ratio in sediment" = Contamination ratio in sediment for this substance "Status in sediment" = Status of the indicator in sediment (“Achieve”, “Fail” or “Not assessed”) "Contamination ratio in water" = Contamination ratio in water for this substance "Status in water" = Status of the indicator in water(“Achieve”, “Fail” or “Not assessed”) "Overall Status" = Overall Status of the indicator according to one-out-all-out (“Achieve”, “Fail” or “Not assessed”)

This indicator evaluates the eutrophication status of the Baltic Sea area based on annual total nitrogen concentration. The measured average total nitrogen is derived from in-situ measurements from oceanographic monitoring data for 2011-2016 (µmol/l), surface water (0-10 m). More detailed description on methodology can be found at http://www.helcom.fi/baltic-sea-trends/indicators/total-nitrogen-(tn)/ and http://www.helcom.fi/Documents/Eutrophication%20assessment%20manual.pdf This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 open sea sub-basins and division of coastal areas to WFD water types or water bodies). The open sea areas have been assessed based on HELCOM Monitoring data and results for coastal areas are based on national WFD results. Some of the open sea areas have not been assessed due to lack of commonly agreed threshold value. Attribute information: “HELCOM_ID” = Code of the HELCOM scale 4 assessment unit "Country" = Country/ Opensea "level_2" = Name of the HELCOM scale 2 assessment unit "Name" = Name of the HELCOM scale 4 assessment unit” "Area (km2)" = Area of the HELCOM scale 2 assessment unit "Indicator" = Name of indicator “Season” = Season of the indicator “Period” = Assessment unit period (20112016 = 2011 – 2016) "Indicator value (ES)" = Indicator value calculated for the assessment unit "Standard deviation (STD)" = Standard deviation of data used for calculating ES "Number of samples " = Number of samples per assessment unit "Thershold value (ET)" = Commonly agreed thershold value "Ratio between ES and ET (ER)" = Ratio between ES and ET (in case of indicator with positive response to eutrophication) "ES_SCORE” = Confidence based on the data used for calculating ES "ET_SCORE” = Confidence of target-setting procedure "I_SCORE” = Confidence (%) = average of ES-Score and ET-Score "Indicator Weight" = Indicator Weight in integrated eutrophication assessment “Status” = Status of the indicator (“Good”, “Not good”, “Not assessed” or "Not applicable") “Confidence” = Confidence of result based on I-SCORE (“High”, “Moderate” or “Low”) "AULEVEL" = Assessment unit level used for the indicator "ET_wint" = Commonly agreed thershold value in winter "ER_winter" = Ratio between ES and ET (in case of indicator with positive response to eutrophication) in winter "Winter status" = Status of the indicator (“Achieve”, “Fail” or “Not assessed”) in winter

This dataset represents the Integrated biodiversity status assessment for pelagic habitats using the BEAT tool. Status is shown in five categories based on the integrated assessment scores obtained in the tool. Biological Quality Ratios (BQR) above 0.6 correspond to good status. Open sea areas were assessed based on the core indicators ‘Zooplankton mean size and total stock’ and ‘Chlorophyll-a’, as well as the pre-core indicator ‘Cyanobacterial bloom index’ . Coastal areas were assessed by national indicators. This dataset displays the result of the integrated biodiversity status in HELCOM Assessment unit Scale 4 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas and division of the coastal areas by WFD water types or water bodies). Attribute information: "BQR" = Biological Quality Ratio "Confidence" = Confidence of the assessment "HELCOM_ID" = Code of the HELCOM assessment unit "Country" = Country of coastal assessment unit/ open sea "Level2" = HELCOM sub-basins (name of the scale 2 assessment unit) "Name" = Name of the HELCOM scale 4 assessment unit "Area_km2" = Area of assessment unit "AULEVEL" = scale of the assessment unit "HID" = assessment unit ID by country "SAUID" = ID number for the spatial assessment unit "EcosystemC" = Ecosystem component assessed "Confiden_1" = Confidence of the assessment (0-1, higher values mean higher confidence) "Total_numb" = Number of indicators used in assessment "STATUS" = Integrated status category (0-0.2 = not good (lowest score), 0.2-0.4 = not good (lower score), 0.4-0.6 = not good (low score), 0.6-0.8 = good (high score, 0.8-1.0 = good (highest score))

This dataset represents the underlying biota data on core indicator Perfluorooctane sulphonate (PFOS). The core indicator evaluates the status of the marine environment based on concentrations of perfluorooctane sulphonate (PFOS) in Baltic Sea fish and in a few assessment units using the secondary matrix seawater. Quantitative thresholds are used to evaluate if core indicators status is Achieve, Fail or Not assessed. Good status is achieved when the concentrations of PFOS are below the threshold value. This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas and division of the coastal areas by WFD water types or water bodies). Attribute information: "region" = name of subbasin "country" = country "station" = Unique code for the station "stationNam" = name for the station "determinan" = determinant parameter "detGroup" = the grouping of determinands used to display the results "species" = species of measurement "_shape" = shape used to map assessment results "colour" = colour used to map assessment results "l3area" = HELCOM assessment unit on scale 3 "l4area" = HELCOM assessment unit on scale 4 "nyall" = total number of years of data "nyfit" = number of years of data used in the assessment "nypos" = number of years with at least one measurement above the limit of detection "lastyear" = most recent year of data "prtrend" = the significance of the change over the most recent 20 years; for the assessment conducted in November 2017 and published in June 2018, this is the period 1996-2016 "rtrend" = annual ‘linear’ change over the most recent 20 years "meanLY" = fitted value in last monitoring year "clLY" = upper one-sided 95% confidence limit on fitted value in last monitoring year "HQS" = Threshold value "HQSdiff" = difference between clLY and HQS "HQSbelow" = whether the mean value in the last monitoring year is significantly below HQS

This core indicator evaluates the status of abundance of breeding waterbirds in the Baltic Sea region. The breeding waterbirds are considered to reflect good status when at least 75% of the considered species deviate less than 30% downwards (species laying more than one egg per year) or 20% downwards (species laying one egg per year) from the baseline condition during the reference period 1991-2000. This dataset displays the result of the indicator in HELCOM Assessment Scale 1 (Whole Baltic Sea). Attribute information: "Status" = Status of the indicator (“Achieve”, “Fail” or “Not assessed”) "AULEVEL" = Assessment unit level used for the indicator "level_1" = Name of HELCOM scale 1 assessment unit "Common Shelduck" = Results for common shelduck "Eurasian Oystercatcher" = Results for Eurasian oystercatcher "Pied Avocet" = Results for pied avocet "Ringed Plover" = Results for ringed plover "Turnstone" = Results for turnstone "Dunlin" = Results for dunlin "Arctic Skua" = Results for Arctic skua "Common Gull" = Results for common gull "Herrin Gull" = Results for herring gull "Lesser black-backed gull" = Results for lesser black-backed gull "Little Tern" = Results for little tern "Caspian Tern" = Results for Caspian tern "Arctic Tern" = Results for Arctic tern "Goosander" = Results for goosander "Red-breasted Merganser" = Results for red-breasted merganser "Great crested grebe" = Results for great crested grebe "Great Cormorant" = Results for great cormorant "Razorbill" = Results for razorbill "Common Guillemot" = Results for common guillemot "Black Guillemot" = Results for black guillemot "Tufted Duck" = Results for tufted duck "Common Eider" = Results for common eider "Velvet Scoter" = Results for velvet scoter "Mute Swan" = Results for mute swan "Graylag Goose" = Results for greylag goose "Great black-backed Gull" = Results for great black-backed gull "Sandwich Tern" = Results for sandwich tern "Greater Scaup" = Results for greater scaup

This dataset contains the in-situ monitoring data used for calculating eutrophication indicator results for following indicators: Chlorophyll-a 2018 Dissolved inorganic nitrogen 2018 Dissolved inorganic phosphorus 2018 Total nitrogen 2018 Total phosphorus 2018 Water clarity 2018 This dataset is extraction for 2011-2016 assessment period from HELCOM COMBINE database, which contains all HELCOM oceanographic monitoring data. Full COMBINE database can be accessed from dedicated web page Attribute information: "Cruise": Platform code of the monitoring cruise, which can be queried from http://vocab.ices.dk/ "Station": Station number "Year": Year of sampling event "Month": Month of sampling event "Day": Day of sampling event "Hour": Hour of sampling event "Minute": Minute of sampling event "Latitude": Latitude coordinate of the sampling location (WGS84 decimal degrees) "Longitude": Longitude coordinate of the sampling location (WGS84 decimal degrees) "BotDepth": Bottom depth (m) of sampling location "Secchi": Secchi depth at sampling location "StationNam": Station name from ICES Station dictionary "Assessment" = HELCOM assessment unit ID "Depth": Sampling depth (m) "Temperature": Temperature (ºC) "Salinity": Salinity "Oxygen": Oxygen (ml/l) "Phosphate": Phosphate (umol/l) "TotalPhos": Total phosphorus (umol/l) "Silicate": Silicate (umol/l) "Nitrate": Nitrate (umol/l) "Nitrite": Nitrite (umol/l) "Ammonium": Ammonium (umol/l) "TotalNitr": Total nitrogen (umol/l) "HydrogenS": Hydrogen sulphide (umol/l) "pH": pH "Alkalinity": Alkalinity (mEq/l) "Chlorophyl": Chlorophyll-a (ug/l)

This core indicator evaluates the eutrophication status of the Baltic Sea area based on oxygen debt. The oxygen debt value is calculated based on data reported to HELCOM COMBINE database using script developed in TARGREV project and further developed within EUTRO OPER project. The R-script for calculating oxygen is accessible from https://github.com/ices-tools-prod/HEAT/tree/master/scripts/OxygenDebt This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 open sea sub-basins and division of coastal areas to WFD water types or water bodies), but applicable only to certain open sea assessment units. Coastal areas were excluded from the shapefile. Attribute information: "HELCOM_ID" = Code of the HELCOM scale 4 assessment unit "Country" = country/ opensea "level_2" = name of subbasin "level_4" = Name of the HELCOM scale 4 assessment unit "Area (km2)" = Area of the HELCOM scale 2 assessment unit “Name_1” = "Name" = Name of the open sea area “Season” = Season of the indicator “Period” = Assessment unit period (20112016 = 2011 – 2016) "Indicator value (ES)" = Indicator value calculated for the assessment unit "Standard deviation (STD)" = Standard deviation of data used for calculating ES "Number of samples " = Number of samples in assessment unit "Thershold value (ET)" = Commonly agreed thershold value "Ratio between ES and ET (ER)" = Ratio between ES and ET (in case of indicator with positive response to eutrophication) "ES_SCORE” = Confidence based on the data used for calculating ES "ET_SCORE” = Confidence of target-setting procedure "I_SCORE” = Confidence (%) = average of ES-Score and ET-Score "Indicator Weight" = Indicator Weight in integrated eutrophication assessment “Status” = Status of the indicator (“Achieve”, “Fail”, “Not assessed” or "Not applicable") “Confidence” = Confidence of result based on I-SCORE (“High”, “Moderate” or “Low”) "AULEVEL" = Assessment unit level used for the indicator