This dataset contains the in-situ monitoring data used for calculating eutrophication indicator results for following indicators: Chlorophyll-a 2018 Dissolved inorganic nitrogen 2018 Dissolved inorganic phosphorus 2018 Total nitrogen 2018 Total phosphorus 2018 Water clarity 2018 This dataset is extraction for 2011-2016 assessment period from HELCOM COMBINE database, which contains all HELCOM oceanographic monitoring data. Full COMBINE database can be accessed from dedicated web page Attribute information: "Cruise": Platform code of the monitoring cruise, which can be queried from http://vocab.ices.dk/ "Station": Station number "Year": Year of sampling event "Month": Month of sampling event "Day": Day of sampling event "Hour": Hour of sampling event "Minute": Minute of sampling event "Latitude": Latitude coordinate of the sampling location (WGS84 decimal degrees) "Longitude": Longitude coordinate of the sampling location (WGS84 decimal degrees) "BotDepth": Bottom depth (m) of sampling location "Secchi": Secchi depth at sampling location "StationNam": Station name from ICES Station dictionary "Assessment" = HELCOM assessment unit ID "Depth": Sampling depth (m) "Temperature": Temperature (ºC) "Salinity": Salinity "Oxygen": Oxygen (ml/l) "Phosphate": Phosphate (umol/l) "TotalPhos": Total phosphorus (umol/l) "Silicate": Silicate (umol/l) "Nitrate": Nitrate (umol/l) "Nitrite": Nitrite (umol/l) "Ammonium": Ammonium (umol/l) "TotalNitr": Total nitrogen (umol/l) "HydrogenS": Hydrogen sulphide (umol/l) "pH": pH "Alkalinity": Alkalinity (mEq/l) "Chlorophyl": Chlorophyll-a (ug/l)

This dataset represents the underlying water data on core indicator Perfluorooctane sulphonate (PFOS). The core indicator evaluates the status of the marine environment based on concentrations of perfluorooctane sulphonate (PFOS) in Baltic Sea fish and in a few assessment unit using the secondary matrix seawater. Quantitative thresholds are used to evaluate if core indicators status is Achieve, Fail or Not assessed. Good status is achieved when the concentrations of PFOS are below the threshold value. This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas and division of the coastal areas by WFD water types or water bodies). Attribute information: "region" = name of subbasin "country" = country "station" = Unique code for the station "stationNam" = name for the station "determinan" = determinant parameter "detGroup" = the grouping of determinands used to display the results "filtered" = Filtered or unfiltered water sample used in analysis "_shape" = shape used to map assessment results "colour" = colour used to map assessment results "l3area" = HELCOM assessment unit on scale 3 "l4area" = HELCOM assessment unit on scale 4 "nyall" = total number of years of data "nyfit" = number of years of data used in the assessment "nypos" = number of years with at least one measurement above the limit of detection "lastyear" = most recent year of data "prtrend" = the significance of the change over the most recent 20 years; for the assessment conducted in November 2017 and published in June 2018, this is the period 1996-2016 "rtrend" = annual ‘linear’ change over the most recent 20 years "meanLY" = fitted value in last monitoring year "clLY" = upper one-sided 95% confidence limit on fitted value in last monitoring year "EQS" = Threshold value "EQSdiff" = difference between clLY and EQS "EQSbelow" = whether the mean value in the last monitoring year is significantly below EQS

This dataset represents the underlying data on core indicator Abundance of coastal fish key functional groups. The core indicator evaluates the abundance of selected functional groups of coastal fish in the Baltic Sea. Quantitative thresholds are used to evaluate if core indicators status is Good, Not good or Not assessed. As a rule, good status is achieved when the abundance of piscivores (i.e. fish that feed on other fish) is above a site-specific threshold value, and the abundance of cyprinids or mesopredators (i.e. mid trophic-level fish) is within an acceptable range for the specific site. The status of functional groups of coastal fish in the Baltic Sea has been evaluated by assessing the status of piscivores and cyprinids/mesopredators during the period 2011-2016. This dataset displays the result of the indicator in HELCOM Assessment Scale 3 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and offshore areas). Attribute information: "COUNTRYID" = Country code "ORGANIZATI" = Data provider "AREANAME" = ICES area name "ASSESSMENT" = Name of scale 3 HELCOM assessment unit "IndicatorI" = Indicator name (abbreviation) "Functional" = Functional group "IndicatorV" = Result value for the indicator "MethodId" = Catch method "GearType_N" = Gear type of catch "Season_NAM" = Season

This dataset represents the underlying data on core indicator Diatom/Dinoflagellate ration 2018. The core indicator evaluates phytoplankton community structure to determine whether it reflects good environmental status. Quantitative thresholds are used to evaluate if core indicators status is Good, Not good or Not assessed. Attribute information: "Station" = Name of station "Date" = Sampling date and time "Assessment" = Name of HELCOM level 2 assessment unit "Biomass_of" = Biomass of all diatoms "Biomass_1" = Biomass of all dinoflagellates (autotrophic and mixotrophic) "Data_origi" = Data originating organization "Use_restri" = Data use restrictions (YES/NO). Restricted data is not included.

This dataset represents the integrated assessment of hazardous substances in the Baltic Sea in 2011-2016, assessed using the CHASE tool (https://github.com/helcomsecretariat/CHASE-integration-tool). The integration is based on hazardous substances core indicators covering concentrations of hazardous substances. This dataset displays the result of the assessment in HELCOM Assessment unit Level 3 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and offshore areas). Attribute information: "HELCOM_ID" = ID of the HELCOM scale 3 assessment unit "country" = Country/ opensea "level_3" = Name of the HELCOM scale 3 assessment unit "area_km2 = Area of the HELCOM scale 3 assessment unit "AULEVEL" = Scale of the assessment units "coastal" = Code of scale 3 HELCOM assessment unit "Input" = Contamination ratio of the assessment unit (Higher score indicates higher contamination) "Confidence" = Confidence of the assessment (Low/ Moderate/ High/ Not assessed) "Status" = Status value for the assessment (= 1.0: Low contamination score, > 1.0: High contaminantion score)

This core indicator evaluates the status of the marine environment based on concentrations of radioactive substances (Cs-137) in seawater and biota. Quantitative thresholds are used to evaluate if core indicators status is "Achieve", "Fail" or "Not assessed". Good status is achieved when concentrations reach levels measured before the Chernobyl accident in 1986. This dataset displays the result of the indicator in HELCOM Assessment Scale 2 (Division of the Baltic Sea into 17 sub-basins) for herring. Attribute information: "OBJECTID" = Object identification "HELCOM_ID" = Code of the HELCOM scale 2 assessment unit "Indicator" = Name of HELCOM Core indicator "Type" = Type of indicator "Threshold value" = Threshold value for specific assessment unit "Indicator value" = Value of indicator calculated for specific assessment unit "Status" = Status of the indicator (“Achieve”, “Fail” or “Not assessed”)

This dataset represents the Integrated biodiversity status assessment for pelagic habitats using the BEAT tool. Status is shown in five categories based on the integrated assessment scores obtained in the tool. Biological Quality Ratios (BQR) above 0.6 correspond to good status. Open sea areas were assessed based on the core indicators ‘Zooplankton mean size and total stock’ and ‘Chlorophyll-a’, as well as the pre-core indicator ‘Cyanobacterial bloom index’ . Coastal areas were assessed by national indicators. This dataset displays the result of the integrated biodiversity status in HELCOM Assessment unit Scale 4 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas and division of the coastal areas by WFD water types or water bodies). Attribute information: "BQR" = Biological Quality Ratio "Confidence" = Confidence of the assessment "HELCOM_ID" = Code of the HELCOM assessment unit "Country" = Country of coastal assessment unit/ open sea "Level2" = HELCOM sub-basins (name of the scale 2 assessment unit) "Name" = Name of the HELCOM scale 4 assessment unit "Area_km2" = Area of assessment unit "AULEVEL" = scale of the assessment unit "HID" = assessment unit ID by country "SAUID" = ID number for the spatial assessment unit "EcosystemC" = Ecosystem component assessed "Confiden_1" = Confidence of the assessment (0-1, higher values mean higher confidence) "Total_numb" = Number of indicators used in assessment "STATUS" = Integrated status category (0-0.2 = not good (lowest score), 0.2-0.4 = not good (lower score), 0.4-0.6 = not good (low score), 0.6-0.8 = good (high score, 0.8-1.0 = good (highest score))

This dataset represents the underlying data on core indicator 'Reproductive disorders: malformed embryos of amphipods 2018'. The core indicator evaluates the status of the marine environment based on the presence of hazardous substances in the bottom sediments. The rate of embryo malformations indicates reproductive toxicity due to the presence of hazardous substances in the bottom sediments. The threshold value has not been achieved on all stations within each basin indicating that toxic effects of contaminants may be present. The variability of the malformation rate is much greater within a basin than between the Bothnian Sea and the Baltic proper. This dataset displays the result of the indicator in HELCOM Assessment Scale 2 (Division of the Baltic Sea into 17 sub-basins). Attribute information: "YEAR" = Year of sampling "Basin" = Subbasin abbreviation "REGION" = Region code within the Baltic Sea "STATN" = Station "Lat_WGS84d" = latitude coordinate of station "Lon_WGS84d" = longitude coordinate of station "TotalEmbry" = Total embryos "UNDIFFiren" = Undifferentiated "MALFORmed" = Malformed "MEMBraneDa" = Membrane damage "FemalesWME" = Females with malformed embryos "NofFemales" = Number of Females "AveFecundi" = Average Fecundity "STN" = "FFemWAE" = Frequency Females with aberrated embryos "FreqAberrE" = Frequency Aberrant Embryos "inGES_Fem" = inGES (Females) "inGES_Emb" = inGES (Embryos) "inGES_Over" = inGES (overall)

This core indicator evaluates the status of abundance of breeding waterbirds in the Baltic Sea region. The breeding waterbirds are considered to reflect good status when at least 75% of the considered species deviate less than 30% downwards (species laying more than one egg per year) or 20% downwards (species laying one egg per year) from the baseline condition during the reference period 1991-2000. This dataset displays the result of the indicator in HELCOM Assessment Scale 1 (Whole Baltic Sea). Attribute information: "Status" = Status of the indicator (“Achieve”, “Fail” or “Not assessed”) "AULEVEL" = Assessment unit level used for the indicator "level_1" = Name of HELCOM scale 1 assessment unit "Common Shelduck" = Results for common shelduck "Eurasian Oystercatcher" = Results for Eurasian oystercatcher "Pied Avocet" = Results for pied avocet "Ringed Plover" = Results for ringed plover "Turnstone" = Results for turnstone "Dunlin" = Results for dunlin "Arctic Skua" = Results for Arctic skua "Common Gull" = Results for common gull "Herrin Gull" = Results for herring gull "Lesser black-backed gull" = Results for lesser black-backed gull "Little Tern" = Results for little tern "Caspian Tern" = Results for Caspian tern "Arctic Tern" = Results for Arctic tern "Goosander" = Results for goosander "Red-breasted Merganser" = Results for red-breasted merganser "Great crested grebe" = Results for great crested grebe "Great Cormorant" = Results for great cormorant "Razorbill" = Results for razorbill "Common Guillemot" = Results for common guillemot "Black Guillemot" = Results for black guillemot "Tufted Duck" = Results for tufted duck "Common Eider" = Results for common eider "Velvet Scoter" = Results for velvet scoter "Mute Swan" = Results for mute swan "Graylag Goose" = Results for greylag goose "Great black-backed Gull" = Results for great black-backed gull "Sandwich Tern" = Results for sandwich tern "Greater Scaup" = Results for greater scaup

This indicator evaluates the eutrophication status of the Baltic Sea area based on annual total nitrogen concentration. The measured average total nitrogen is derived from in-situ measurements from oceanographic monitoring data for 2011-2016 (µmol/l), surface water (0-10 m). More detailed description on methodology can be found at http://www.helcom.fi/baltic-sea-trends/indicators/total-nitrogen-(tn)/ and http://www.helcom.fi/Documents/Eutrophication%20assessment%20manual.pdf This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 open sea sub-basins and division of coastal areas to WFD water types or water bodies). The open sea areas have been assessed based on HELCOM Monitoring data and results for coastal areas are based on national WFD results. Some of the open sea areas have not been assessed due to lack of commonly agreed threshold value. Attribute information: “HELCOM_ID” = Code of the HELCOM scale 4 assessment unit "Country" = Country/ Opensea "level_2" = Name of the HELCOM scale 2 assessment unit "Name" = Name of the HELCOM scale 4 assessment unit” "Area (km2)" = Area of the HELCOM scale 2 assessment unit "Indicator" = Name of indicator “Season” = Season of the indicator “Period” = Assessment unit period (20112016 = 2011 – 2016) "Indicator value (ES)" = Indicator value calculated for the assessment unit "Standard deviation (STD)" = Standard deviation of data used for calculating ES "Number of samples " = Number of samples per assessment unit "Thershold value (ET)" = Commonly agreed thershold value "Ratio between ES and ET (ER)" = Ratio between ES and ET (in case of indicator with positive response to eutrophication) "ES_SCORE” = Confidence based on the data used for calculating ES "ET_SCORE” = Confidence of target-setting procedure "I_SCORE” = Confidence (%) = average of ES-Score and ET-Score "Indicator Weight" = Indicator Weight in integrated eutrophication assessment “Status” = Status of the indicator (“Good”, “Not good”, “Not assessed” or "Not applicable") “Confidence” = Confidence of result based on I-SCORE (“High”, “Moderate” or “Low”) "AULEVEL" = Assessment unit level used for the indicator "ET_wint" = Commonly agreed thershold value in winter "ER_winter" = Ratio between ES and ET (in case of indicator with positive response to eutrophication) in winter "Winter status" = Status of the indicator (“Achieve”, “Fail” or “Not assessed”) in winter