This dataset contains core indicator results developed under the HELCOM Third Holistic Assessment of the Ecosystem Health of the Baltic Sea (HOLAS 3).

The indicator evaluates the status of the soft-bottom macrofauna community above the permanent halocline in the open sea areas of the Baltic Sea. Quantitative thresholds are used to classify the core indicators status in Achieve, Fail or Not assessed. The current assessment result shows good status in most of the evaluated assessment units. The indicator is not used in coastal areas which are assessed by national methods or in areas below the halocline which are assessed using the Oxygen debt indicator. The indicator takes into account the relative proportion of sensitive and tolerant species, as well as species richness and abundance. This dataset displays the result of the indicator in HELCOM Assessment Scale 3 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas), so that the indicator is only applicable in the open sea assessment units. "HELCOM_ID" = HELCOM assessment unit scale 3 ID "country" = Country "level_2" = Name of scale 2 HELCOM assessment unit "level_3" = Name of scale 3 HELCOM assessment unit "coastal" = Code of scale 3 HELCOM assessment unit "open_sea" = Name of the open sea area "Status" = Status of the indicator (“Achieve”, “Fail” or “Not assessed”) "Status value" = Value of the indicator "BQI normal" Biological Quality Ratio

This core indicator evaluates the status of the marine environment based on concentrations of Organobromines HBCDD in sediment. Quantitative threshold value is used to evaluate if core indicators status is "Achieve", "Fail" or "Not assessed". Attribute specifications and units: "HELCOM_ID" = Code of the HELCOM scale 4 assessment unit "country": country in which the HELCOM assessment unit is located or a mention to an open sea area "level_2" = Name of the HELCOM assessment unit in scale 2 "Name" = Name of the HELCOM assessment unit in scale 4 "Open_sea" = Name of the HELCOM assessment unit in the open sea "F2_Name" = Name of the HELCOM assessment unit "determinan" = Determinat "est" = The estimated mean loge concentration in the assessment unit "se" = The standard error on the estimated mean log concentration in the assessment unit "fit" = The estimated mean concentration in the assessment unit "upper_cl" = Upper one-sided 95% confidence limit on the mean concentration: exp(est + qnorm(0.95) * see) "Status" = Overall Status of the indicator according to one-out-all-out

This core indicator evaluates the status of the marine environment based on concentrations of heavy metal Lead (Pb) in biota. Quantitative thresholds are used to classify core indicators status in “Achieve”, “Fail” or “Not assessed”. Threshold values are based on Environmental quality standards (EQS), defined at EU level for substances included in the priority list under the Water Framework Directive. This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas and division of the coastal areas by WFD water types or water bodies). Attribute specifications and units: "HELCOM_ID" = Code of the HELCOM scale 4 assessment unit "country": country in which the HELCOM assessment unit is located or a mention to an open sea area "level_2" = Name of the HELCOM assessment unit in scale 2 "Name" = Name of the HELCOM assessment unit in scale 4 "Open_sea" = Name of the HELCOM assessment unit in the open sea "F2_Name" = Name of the HELCOM assessment unit "determinan" = Determinat "est" = The estimated mean loge concentration in the assessment unit "se" = The standard error on the estimated mean log concentration in the assessment unit "fit" = The estimated mean concentration in the assessment unit "upper_cl" = Upper one-sided 95% confidence limit on the mean concentration: exp(est + qnorm(0.95) * see) "Status" = Overall Status of the indicator according to one-out-all-out

This core indicator evaluates the status of the marine environment based on the presence of hazardous substances in the bottom sediments. The rate of embryo malformations indicates reproductive toxicity due to the presence of hazardous substances in the bottom sediments. The threshold value has not been achieved on all stations within each basin indicating that toxic effects of contaminants may be present. The variability of the malformation rate is much greater within a basin than between the Bothnian Sea and the Baltic proper. This dataset displays the result of the indicator in HELCOM Assessment Scale 2 (Division of the Baltic Sea into 17 sub-basins). Attribute information: "HELCOM_ID" = Code of the HELCOM scale 4 assessment unit "level_2" = name of subbasin "Area (km2)" = Area of the HELCOM scale 2 assessment unit "L2" = ID for the HELCOM scale 2 assessment unit "AULEVEL" = Assessment unit level used for the indicator "STATUS" = Status of the indicator (“Achieve”, “Fail”, "Not assessed" or “Not applicable”)

This core indicator evaluates the status of the marine environment based on concentrations of polyaromatic hydrocarbons PAHs - Fluoranthene in sediment. Quantitative thresholds are used to evaluate if core indicators status is "Achieve", "Fail" or "Not assessed". Attribute specifications and units: "HELCOM_ID" = Code of the HELCOM scale 4 assessment unit "country": country in which the HELCOM assessment unit is located or a mention to an open sea area "level_2" = Name of the HELCOM assessment unit in scale 2 "Name" = Name of the HELCOM assessment unit in scale 4 "Open_sea" = Name of the HELCOM assessment unit in the open sea "F2_Name" = Name of the HELCOM assessment unit "determinan" = Determinat "est" = The estimated mean loge concentration in the assessment unit "se" = The standard error on the estimated mean log concentration in the assessment unit "fit" = The estimated mean concentration in the assessment unit "upper_cl" = Upper one-sided 95% confidence limit on the mean concentration: exp(est + qnorm(0.95) * see) "Status" = Overall Status of the indicator according to one-out-all-out

The layer presents the cumulative negative impacts on marine biodiversity caused by alien species in the Baltic Sea. The layer is based on the Cumulative IMPact of ALien species (CIMPAL) index, developed by Katsanevakis et al. (2016). The original methodology was applied for the Baltic Sea similarly as Korpinen et al. (2019) applied it for the EU waters in their report Multiple pressures and their combined effects in Europe’s seas. The list of species and habitats together with the sensitivity scores are originating from this study and listed in the linage section of this metadata. The index follows a conservative additive model for calculating the cumulative negative impacts of invasive alien species (IAS), based on magnitude of impact and the related strength of evidence following an uncertainty averse strategy. Cumulative impacts of IAS were estimated on the basis of the distributions of invasive species and ecosystems, and both the reported magnitude of ecological impacts and the strength of such evidence. 29 invasive species and 12 habitats were used for the layer, detailed information on the species, habitats and sensitivity scores used in the assessment are given in the lineage section. The information on species and habitats were aggregated to 10x10 km grid, based on their occurrence within each grid cell. Calculation of the index was done with the HELCOM SPIA tool, and the result were converted to the 1x1km SPIA grid. The layer was normalized to be used in the assessment.

This core indicator evaluates the status of the marine environment based on concentrations of heavy metal copper (Cu) in sediment. Quantitative thresholds are used to evaluate if core indicators status is "Achieve", "Fail" or "Not assessed". Threshold values are based on Environmental quality standards (EQS), defined at EU level for substances included in the priority list under the Water Framework Directive. This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas and division of the coastal areas by WFD water types or water bodies). Attribute specifications and units: "HELCOM_ID" = Code of the HELCOM scale 4 assessment unit "country": country in which the HELCOM assessment unit is located or a mention to an open sea area "level_2" = Name of the HELCOM assessment unit in scale 2 "Name" = Name of the HELCOM assessment unit in scale 4 "Open_sea" = Name of the HELCOM assessment unit in the open sea "F2_Name" = Name of the HELCOM assessment unit "determinan" = Determinat "est" = The estimated mean loge concentration in the assessment unit "se" = The standard error on the estimated mean log concentration in the assessment unit "fit" = The estimated mean concentration in the assessment unit "upper_cl" = Upper one-sided 95% confidence limit on the mean concentration: exp(est + qnorm(0.95) * see) "Status" = Overall Status of the indicator according to one-out-all-out

This dataset represents the underlying data on the pre-core indicator Diatom/Dinoflagellate index for HOLAS 3. The core indicator evaluates phytoplankton community structure to determine whether it reflects good environmental status. Quantitative thresholds are used to evaluate if core indicators status is Good, Not good or Not assessed.

This core indicator evaluates the status of the marine environment based on concentrations of Polybrominated diphenyl ethers PBDE in sediment. Quantitative threshold value is used to classify core indicators status in “Achieve”, “Fail” or “Not assessed”.  Attribute specifications and units: "HELCOM_ID" = Code of the HELCOM scale 4 assessment unit "country": country in which the HELCOM assessment unit is located or a mention to an open sea area "level_2" = Name of the HELCOM assessment unit in scale 2 "Name" = Name of the HELCOM assessment unit in scale 4 "Open_sea" = Name of the HELCOM assessment unit in the open sea "F2_Name" = Name of the HELCOM assessment unit "determinan" = Determinat "est" = The estimated mean loge concentration in the assessment unit "se" = The standard error on the estimated mean log concentration in the assessment unit "fit" = The estimated mean concentration in the assessment unit "upper_cl" = Upper one-sided 95% confidence limit on the mean concentration: exp(est + qnorm(0.95) * see) "Status" = Overall Status of the indicator according to one-out-all-out