The indicator evaluates the coincidence of seasonal succession of dominating phytoplankton groups over an assessment period (commonly 5-6 years) using regionally established reference seasonal growth curves and wet weight biomass data. The indicator result value is based on the number of data points falling within the acceptable deviation range set for each monthly point of the reference growth curve and expressed as the percentage to the total number of data points. This result value is then compared to regionally relevant threshold values established to represent acceptable levels of variation. Strong deviations from the reference growth curves will result in failure to meet the thresholds set for acceptable variation, indicating impairment of the environmental status and a failure to meet good status. Seasonal succession of dominating phytoplankton groups displays the result of the indicator in HELCOM Assessment Scale 3 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and offshore areas). Attribute information: "HELCOM_ID" = HELCOM ID of the HELCOM scale 3 assessment unit "country" = Country "level_2" = Name of HELCOM scale 2 assessment unit "level_3" = Name of HELCOM scale 3 assessment unit "Area (km2)" = Area of HELCOM assessment unit "Overall Score" = Indicator value or result "Info" = additional info "AULEVEL" = Assessment unit level used for the indicator "Status" = Status of the indicator (“Achieve”, “Fail” or “Not assessed”) "Assessment" = Assessment unit name "Reference period" = Reference period(s) "Threshold value" = Threshold value (overall) "Indicator cyanobacteria" = Indicator value for cyanobacteria "Indicator dinoflagellates" = Indicator value for dinoflagellates "Indicator diatoms" = Indicator value for diatoms "Indicator Mesodinium rubrum" = Indicator value for Mesodinium rubrum "Indicator green algae" = Indicator value for green algae

This dataset contains pre-core indicator data developed under the HELCOM Third Holistic Assessment of the Ecosystem Health of the Baltic Sea (HOLAS 3).

This core indicator evaluates the status of coastal sea areas of the Baltic Sea based on the abundance of sea trout parr in rivers where they breed. The determination of whether good status is reached is based on a comparison of the observed parr densities in rearing habitats with the reference potential parr densities in the specified habitats. This dataset displays the result of the indicator in HELCOM Assessment Scale 3 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and offshore areas). Attribute information: "HELCOM_ID" = ID of the HELCOM scale 3 assessment unit "level_2" = Name of the HELCOM scale 2 assessment unit "level_3" = Name of HELCOM scale 3 assessment unit "ICES Subdivision" = ICES assessment unit number "Area (km2)" = Area of the HELCOM scale 3 assessment unit "Indicator_" = Name of the indicator "Unit" = Unit of the indicator "Type" = 1 = boundary values increase/decrease monotonically, 2 = optimum range indicator "Status" = Status of the indicator (“Achieve”, “Fail” or “Not assessed”) "ConfA" = Confidence of classification "ConfT" = Temporal confidence of classification "ConfS" = Spatial confidence of classification "ConfM" = Methodological confidence of classification "notes" = additional info "AULEVEL" = Assessment unit level used for the indicator

The Diatom/Dinoflagellate index (Dia/Dino index) reflects the dominance patterns in the phytoplankton spring bloom. It has high relevance for the pathway of the food into the pelagic or benthic food web. In principle, the indicator is applicable in all coastal and open sea assessment units, except lagoons, large river plumes and the Bothnian Bay; however, thresholds for the good status are defined only for the southern and central Baltic Sea up to now. In this assessment unit, the average Dia/Dino index of the years 2016-2021 was just below the threshold value of 0.5 for good status. The confidence of the indicator evaluation depends on the data frequency. The data have to represent the diatom and dinoflagellate blooms adequately. If the diatom bloom is not sufficiently represented in the data, an alternative Dia/Dino index may be applied, based on silicate consumption data. This indicator is robust; its calculation is simple and traceable. The phytoplankton monitoring is operational in the whole Baltic Sea using methods prescribed in the COMBINE manual. Currently, a high quality of the data is assured by the experts of the HELCOM Phytoplankton Expert Group (PEG). The basic data are phytoplankton biomass data, determined as explained in the HELCOM COMBINE manual, originating from the depth of 0 – 10 m. Also silicate data were used that were taken parallel to the phytoplankton sampling. Diatom-dinoflagellate ratio dataset displays the result of the indicator in HELCOM Assessment Scale 2 (Division of the Baltic Sea into 17 sub-basins). Attribute information: "HELCOM_ID" = ID of the HELCOM scale 2 assessment unit "level_2" = Name of the HELCOM scale 2 assessment unit "Indicator_" = Name of the indicator "Period" = Interval of year of the sampling "AnnualSamp" = Assessment average sampling value "Unit" = Unit of the indicator "Type" = Type of indicator (1=monotonic, 2=unimodal, optimal range) "Threshold_" = Threshold value of indicator "Indicator1" = Result of the indicator "Status" = Status of the indicator (“Achieve”, “Fail” or “Not assessed”)

This dataset contains results on HELCOM Assessment unit level 4b for total nitrogen. The information provided represents the data and results from the HELCOM HOLAS 3 indicator evaluation for eutrophication, covering the data period from 2016-2021. Data reported from national monitoring programmes to the HELCOM COMBINE database (hosted by ICES) is utilized for open sea assessment units. Open sea data extraction is carried out by ICES for in-situ (bottle) data creating the underlying assessment dataset [link ]. Coastal assessment units (WFD water types or water bodies) are assessed based on WFD result data reported by countries. Indicator analysis of both open sea and coastal areas is carried out using the HEAT assessment tool (https://github.com/ices-tools-prod/HEAT). This analysis provide the basis of the HELCOM indicator evaluations and are utilized in the HOLAS 3 thematic assessment of eutrophication. Attribute description: ES = Eutrophication Status ES_SD = Standard Deviation ES_N = Number of Observations ES_N_Min = Minimum Number of Observations any given year ES_SE = Standards Error ES_CI = Confidence Interval ET = Eutrophication Target / Threshold ER = Eutrophication Ratio ACDEV = Acceptable Deviation BEST = ET / (1 + ACDEV / 100) EQR = Ecological Quality Ratio EQR_HG = Ecological Quality Ratio High/Good Boundary EQR_GM = Ecological Quality Ratio Good/Moderate Boundary EQR_MP = Ecological Quality Ratio Moderate/Poor Boundary EQR_PB = Ecological Quality Ratio Poor/Bad Boundary EQRS = Ecological Quality Ratio Scaled GTC = General Temporal Confidence STC = Specific Temporal Confindence TTC = Total Temporal Confidence GSC = General Spatial Confidence SSC = Specific Spatial Confidence TSC = Total Spatial Confidence TC = Total Confidence

This core indicator evaluates the status of the marine environment based on concentrations of heavy metal Lead (Pb) in biota. Quantitative thresholds are used to classify core indicators status in “Achieve”, “Fail” or “Not assessed”. Threshold values are based on Environmental quality standards (EQS), defined at EU level for substances included in the priority list under the Water Framework Directive. This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas and division of the coastal areas by WFD water types or water bodies). Attribute specifications and units: "HELCOM_ID" = Code of the HELCOM scale 4 assessment unit "country": country in which the HELCOM assessment unit is located or a mention to an open sea area "level_2" = Name of the HELCOM assessment unit in scale 2 "Name" = Name of the HELCOM assessment unit in scale 4 "Open_sea" = Name of the HELCOM assessment unit in the open sea "F2_Name" = Name of the HELCOM assessment unit "determinan" = Determinat "est" = The estimated mean loge concentration in the assessment unit "se" = The standard error on the estimated mean log concentration in the assessment unit "fit" = The estimated mean concentration in the assessment unit "upper_cl" = Upper one-sided 95% confidence limit on the mean concentration: exp(est + qnorm(0.95) * see) "Status" = Overall Status of the indicator according to one-out-all-out

This dataset contains core indicator results developed under the HELCOM Third Holistic Assessment of the Ecosystem Health of the Baltic Sea (HOLAS 3).

This dataset contains data used for the HELCOM Core indicator State of the soft-bottom macrofauna community for HOLAS 3. Attribute information: "SampleID" = Sample ID "Station" = Station name "Year" = Year of sampling event "Latitude" = Latitude coordinate (WGS84 decimal degrees) "Longitude" = Longitude coordinate (WGS84 decimal degrees) "Depth" = Depth of station (m) "Sentivit" = Sensitivity subset "Sampling_a" = Sampling area (cm2) "Sieve_mesh" = Sive mesh size (microm) "BQI" = Benthic quality index value "Data sourc" = Source of data (national monitoring / other) "Data_origi" = Data providing organization "Country" = Data providing country "Assessment" = HELCOM Level 2 assessment unit where the station resides

The dataset contains the compilation of the abundance and distribution of Baltic seals from the data submitted by HELCOM contracting parties to the data call for HOLAS 3. Data was received from DE, DK, EE, FI, PL and SE. The dataset contains a geodatabase with the harmonized data. Data were provided in point, line and polygon format.

Input of heat pressure dataset contains delta heat values from warm water discharge of - Discharge of warm water from nuclear power plants - Fossil fuel energy production. Discharge of warm water from nuclear power plants (2016-2021): 1 km buffer with steep decrease around outlet (Type D decline), composed of 4 rings [1]. Average input of heat load (Twh) of discharge of warm water from the nuclear power plant outlets. No data on heat load was available for the Leningrad nuclear power plant; therefore, the average heat load of discharge of warm water from nuclear power plants was given. Fossil fuel energy production (only location available): 1 km buffer with steep decrease around outlet (Type D decline), composed of 6 rings[12]. Heat load 1 (TWh) was given to all production sites, based on the average heat load of an individual production site in Helsinki. Heat load from both layers were summed and the layer was normalized. [1] Extent based on Ilus et al. 1986.