This dataset represents the integrated assessment of hazardous substances in the Baltic Sea in 2016-2021. This dataset displays the result of the assessment in HELCOM Assessment unit Level 3 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and offshore areas).

This dataset represents the aggregated results for pelagic habitat indicators from eutrophication assessment (Chlorophyll-a and Water Clarity). The dataset was created in order to update the information for the integrated assessment under HOLAS 3. MEAN_EQRS_PelagicIntegration_NEW=Mean of Chrolophyll-a and Water clarity indicator MEAN_EQRS_CPHL=Mean EQRS of Chlorophyll-a Clarity indicator 2016-2021 MEAN_EQRS_SECC=Mean EQRS of Water Clarity indicator 2016-2021 Status=Status of Assessment unit based on mean of Chrolophyll-a and Water clarity indicator (Good, Moderate, Poor, Bad, Not assessed)

This dataset represents the underlying data on core indicator 'Reproductive disorders: malformed embryos of amphipods 2018'. The core indicator evaluates the status of the marine environment based on the presence of hazardous substances in the bottom sediments. The rate of embryo malformations indicates reproductive toxicity due to the presence of hazardous substances in the bottom sediments. The threshold value has not been achieved on all stations within each basin indicating that toxic effects of contaminants may be present. The variability of the malformation rate is much greater within a basin than between the Bothnian Sea and the Baltic proper. This dataset displays the result of the indicator in HELCOM Assessment Scale 2 (Division of the Baltic Sea into 17 sub-basins). Attribute information: "YEAR" = Year of sampling "Basin" = Subbasin abbreviation "REGION" = Region code within the Baltic Sea "STATN" = Station "Lat_WGS84d" = latitude coordinate of station "Lon_WGS84d" = longitude coordinate of station "TotalEmbry" = Total embryos "UNDIFFiren" = Undifferentiated "MALFORmed" = Malformed "MEMBraneDa" = Membrane damage "FemalesWME" = Females with malformed embryos "NofFemales" = Number of Females "AveFecundi" = Average Fecundity "STN" = "FFemWAE" = Frequency Females with aberrated embryos "FreqAberrE" = Frequency Aberrant Embryos "inGES_Fem" = inGES (Females) "inGES_Emb" = inGES (Embryos) "inGES_Over" = inGES (overall)

This dataset represents the underlying biota data on core indicator Polybrominated diphenyl ethers (PBDE) .The core indicator evaluates the status of the marine environment based on concentrations of Polybrominated diphenyl ethers (PBDE) in biota and sediment. Quantitative thresholds are used to evaluate if core indicators status is Achieve, Fail or Not assessed. This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas and division of the coastal areas by WFD water types or water bodies). Attribute information: "region" = name of subbasin "country" = country/ opensea "station" = Unique code for the station "stationNam" = name for the station "determinan" = determinant parameter "detGroup" = the grouping of determinands used to display the results "species" = species of measurement "_shape" = shape used to map assessment results "colou"r = colour used to map assessment results "l3area" = HELCOM assessment unit on scale 3 "l4area" = HELCOM assessment unit on scale 4 "nyall" = total number of years of data "nyfit" = number of years of data used in the assessment "nypos" = number of years with at least one measurement above the limit of detection "lastyear" = most recent year of data "prtrend" = the significance of the change over the most recent 20 years; for the assessment conducted in November 2017 and published in June 2018, this is the period 1996-2016 "rtrend" = annual ‘linear’ change over the most recent 20 years "meanLY" = fitted value in last monitoring year "clLY" = upper one-sided 95% confidence limit on fitted value in last monitoring year "HQS" = Threshold value "HQSdiff" = difference between clLY and HQS "HQSbelow" = whether the mean value in the last monitoring year is significantly below HQS

This dataset represents the underlying biota data on core indicator Perfluorooctane sulphonate (PFOS). The core indicator evaluates the status of the marine environment based on concentrations of perfluorooctane sulphonate (PFOS) in Baltic Sea fish and in a few assessment units using the secondary matrix seawater. Quantitative thresholds are used to evaluate if core indicators status is Achieve, Fail or Not assessed. Good status is achieved when the concentrations of PFOS are below the threshold value. This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas and division of the coastal areas by WFD water types or water bodies). Attribute information: "region" = name of subbasin "country" = country "station" = Unique code for the station "stationNam" = name for the station "determinan" = determinant parameter "detGroup" = the grouping of determinands used to display the results "species" = species of measurement "_shape" = shape used to map assessment results "colour" = colour used to map assessment results "l3area" = HELCOM assessment unit on scale 3 "l4area" = HELCOM assessment unit on scale 4 "nyall" = total number of years of data "nyfit" = number of years of data used in the assessment "nypos" = number of years with at least one measurement above the limit of detection "lastyear" = most recent year of data "prtrend" = the significance of the change over the most recent 20 years; for the assessment conducted in November 2017 and published in June 2018, this is the period 1996-2016 "rtrend" = annual ‘linear’ change over the most recent 20 years "meanLY" = fitted value in last monitoring year "clLY" = upper one-sided 95% confidence limit on fitted value in last monitoring year "HQS" = Threshold value "HQSdiff" = difference between clLY and HQS "HQSbelow" = whether the mean value in the last monitoring year is significantly below HQS

The assessment results for pelagic habitats for the HELCOM Third Holistic Assessment of the Ecosystem Health of the Baltic Sea (HOLAS 3) based on integrating following indicators: Zooplankton mean size and total stock, Seasonal succession of dominating phytoplankton groups, Cyanobacterial bloom index, Diatom-dinoflagellate index. Status is shown in five categories based on the integrated assessment scores obtained in the tool. Biological Quality Ratios (BQR) above 0.6 correspond to good status. The datasets were created using the BEAT tool. https://github.com/helcomsecretariat/BEAT German coastal areas were assessed based on WFD indicators.

This dataset represents the underlying data on core indicator Population trends and abundance of seals 2018. This dataset contains reported observations for harbour seals. The core indicator evaluates seal distribution to determine whether it reflects good status. Quantitative thresholds are used to evaluate if core indicators status is Good, Not good or Not assessed. Attribute information: "Species" = Species (HS = Harbour seal) "Country" = Country (2 digit acronym) "Site" = Name of site "Area" = Area "HELCOM_SUB" = Name of HELCOM Level 2 assessment unit "Latitude" = Latitude (WGS84 decimal degrees) of site "Longitude" = Longitude (WGS84 decimal degrees) of site "N2000_ID" = Natura2000 ID, if the site is located within Natura 2000 site (if available) "Year" = Year of observation "Month" = Month of observation "Day" = Day of observation (if available) "Count" = Number of individuals observed on site "Count_type" = County type "Age" = Age of individuals (if available) "No_surveys" = Number of surveys "Method" = Method of survey "CV_Estimate" "Estimate_T" = Estimate type: Modelled / minimum (observed) "Source" = Data source

This dataset represents the Integrated biodiversity status assessment for fish used in State of the Baltic Sea – Second HELCOM holistic assessment 2011-2016. Status is shown in five categories based on the integrated assessment scores obtained in the BEAT tool. Biological Quality ratios (BQR) above 0.6 correspond to good status. The assessment is based on core indicators of coastal fish in coastal areas, and on internationally assessed commercial fish in the open sea. The open sea assessment includes fishing mortality and spawning stock biomass as an average over 2011–2016. Open sea results are given by ICES subdivisions, and are not shown where they overlap with coastal areas. Coastal areas results are given in HELCOM Assessment unit Scale 3 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas) Attribute information: "COUNTRY" = name of the country / opensea "Name" = Name of the coastal assessment unit, scale 3 (empty for ICES open sea units) "HELCOM_ID" = ID of the HELCOM scale 3 assessment unit (empty for ICES open sea units) "EcoystemC" = Ecosystem component analyzed "BQR" = Biological Quality Ratio "Conf" = Confidence (0-1, higher values mean higher confidence) "Total_indi" = Number of HELCOM core indicators included (coastal assessment units) "F__of_area = % of area assessed "D1C2" = MSFD descriptor 1 criteria 2 "Number_of" = Number of open sea species included "Confidence" = Confidence of the assessment "BQR_Demer" = Demersal Biological Quality Ratio "F_spec_Deme" = Number of demersal species included "Conf_Demer" = Confidence for demersal species "BQR_Pelagi" = Pelagic Biological Quality Ratio "F_specPela" = Number of pelagic species included "Conf_Pelag" = Confidence for pelagic species "ICES_SD" = ICES Subdivision number "STATUS" = Integrated status category (0-0.2 = not good (lowest score), 0.2-0.4 = not good (lower score), 0.4-0.6 = not good (low score), 0.6-0.8 = good (high score, 0.8-1.0 = good (highest score))

This core indicator evaluates the status of abundance of breeding waterbirds in the Baltic Sea region. The breeding waterbirds are considered to reflect good status when at least 75% of the considered species deviate less than 30% downwards (species laying more than one egg per year) or 20% downwards (species laying one egg per year) from the baseline condition during the reference period 1991-2000. This dataset displays the result of the indicator in HELCOM Assessment Scale 1 (Whole Baltic Sea). Attribute information: "Status" = Status of the indicator (“Achieve”, “Fail” or “Not assessed”) "AULEVEL" = Assessment unit level used for the indicator "level_1" = Name of HELCOM scale 1 assessment unit "Common Shelduck" = Results for common shelduck "Eurasian Oystercatcher" = Results for Eurasian oystercatcher "Pied Avocet" = Results for pied avocet "Ringed Plover" = Results for ringed plover "Turnstone" = Results for turnstone "Dunlin" = Results for dunlin "Arctic Skua" = Results for Arctic skua "Common Gull" = Results for common gull "Herrin Gull" = Results for herring gull "Lesser black-backed gull" = Results for lesser black-backed gull "Little Tern" = Results for little tern "Caspian Tern" = Results for Caspian tern "Arctic Tern" = Results for Arctic tern "Goosander" = Results for goosander "Red-breasted Merganser" = Results for red-breasted merganser "Great crested grebe" = Results for great crested grebe "Great Cormorant" = Results for great cormorant "Razorbill" = Results for razorbill "Common Guillemot" = Results for common guillemot "Black Guillemot" = Results for black guillemot "Tufted Duck" = Results for tufted duck "Common Eider" = Results for common eider "Velvet Scoter" = Results for velvet scoter "Mute Swan" = Results for mute swan "Graylag Goose" = Results for greylag goose "Great black-backed Gull" = Results for great black-backed gull "Sandwich Tern" = Results for sandwich tern "Greater Scaup" = Results for greater scaup

This dataset contains integrated eutrophication status assessment 2011-2016. The assessment is done using the HEAT 3.0 by combining assessment unit-specific results from various indicators by three MSFD criteria groups (C1: Nutrient levels, C2: Direct effect, C3: Indirect effect). The assessment is done on HELCOM Assessment Unit level 4: HELCOM Subbasins with coastal WFD water type or water bodies. The HEAT 3.0 has been applied for open sea assessment units using HELCOM core indicators and for coastal areas using national WFD indicators. In case of Denmark, the WFD results were used directly, displaying different classification as obtained from HEAT. For more information about the methodology, see the State of the Baltic Sea report and HELCOM Eutrophication assessment manual. Attribute information: "HELCOM_ID": ID of the HELCOM Level 4 Assessment unit "Country": Country/ Opensea "level_2": Name of the HELCOM Level 2 Assessment unit "Name": Name of the HELCOM Level 4 Assessment unit "Area_km2": Area of assessment unit "C1_N": MSFD criteria 1, number of indicators used for calculating Eutrophication Ratio (ER) "C1_ER": MSFD Criteria 1, ER "C1_SCORE": MSFD Criteria 1, Confidence of ER "C2_N": MSFD Criteria 2, number of indicators used for calculating ER "C2_ER": MSFD Criteria 2, ER "C2_SCORE": MSFD Criteria 2, Confidence of ER "C3_N": MSFD Criteria 3, number of indicators used for calculating ER "C3_ER": MSFD Criteria 3, ER "C3_SCORE": Criteria 3, Confidence of ER "N": Number of criteria used for calculating overall ER "ER": Overall ER "SCORE": Status confidence "STATUS": Status classification (Good (classes 0-0.5 & 0.5-1.0), Not Good (classes 1.0-1.5, 1.5-2.0 & >2.0), Not assessed) "CONFIDENCE": Final confidence class (< 50% = low, 50-74 % = Moderate, = 75 % = High) "AULEVEL": Level of assessment units