This dataset represents the integrated assessment of hazardous substances in the Baltic Sea in 2016-2021. This dataset displays the result of the assessment in HELCOM Assessment unit Level 3 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and offshore areas).

This dataset represents the Integrated biodiversity status assessment for fish used in State of the Baltic Sea – Second HELCOM holistic assessment 2011-2016. Status is shown in five categories based on the integrated assessment scores obtained in the BEAT tool. Biological Quality ratios (BQR) above 0.6 correspond to good status. The assessment is based on core indicators of coastal fish in coastal areas, and on internationally assessed commercial fish in the open sea. The open sea assessment includes fishing mortality and spawning stock biomass as an average over 2011–2016. Open sea results are given by ICES subdivisions, and are not shown where they overlap with coastal areas. Coastal areas results are given in HELCOM Assessment unit Scale 3 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas) Attribute information: "COUNTRY" = name of the country / opensea "Name" = Name of the coastal assessment unit, scale 3 (empty for ICES open sea units) "HELCOM_ID" = ID of the HELCOM scale 3 assessment unit (empty for ICES open sea units) "EcoystemC" = Ecosystem component analyzed "BQR" = Biological Quality Ratio "Conf" = Confidence (0-1, higher values mean higher confidence) "Total_indi" = Number of HELCOM core indicators included (coastal assessment units) "F__of_area = % of area assessed "D1C2" = MSFD descriptor 1 criteria 2 "Number_of" = Number of open sea species included "Confidence" = Confidence of the assessment "BQR_Demer" = Demersal Biological Quality Ratio "F_spec_Deme" = Number of demersal species included "Conf_Demer" = Confidence for demersal species "BQR_Pelagi" = Pelagic Biological Quality Ratio "F_specPela" = Number of pelagic species included "Conf_Pelag" = Confidence for pelagic species "ICES_SD" = ICES Subdivision number "STATUS" = Integrated status category (0-0.2 = not good (lowest score), 0.2-0.4 = not good (lower score), 0.4-0.6 = not good (low score), 0.6-0.8 = good (high score, 0.8-1.0 = good (highest score))

This dataset represents the underlying sediment data on core indicator Heavy metals – Lead.The core indicator evaluates the status of the marine environment based on concentrations of heavy metal Lead (Pb) in water, fish liver and sediments. Quantitative thresholds are used to evaluate if core indicators status is Achieve, Fail or Not assessed. Threshold values are based on Environmental quality standards (EQS), defined at EU level for substances included in the priority list under the Water Framework Directive. The Core indicator displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and off-shore areas and division of the coastal areas by WFD water types or water bodies). Attribute information: "region" = name of region "country" = country "station" = Unique text that identifies the station "stationNam" = name for the station "determinan" = determinant parameter (PB = Lead) "detGroup" = the grouping of determinands used to display the results "_shape" = shape used to map assessment results "colour" = colour used to map assessment results "l3area" = HELCOM assessment unit on scale 3 "l4area" = HELCOM assessment unit on scale 4 "nyall" = total number of years of data "nyfit" = number of years of data used in the assessment "nypos" = number of years with at least one measurement above the limit of detection "lastyear" = most recent year of data "prtrend" = the significance of the change over the most recent 20 years; for the assessment conducted in November 2017 and published in June 2018, this is the period 1996-2016 "rtrend" = annual ‘linear’ change over the most recent 20 years "meanLY" = fitted value in last monitoring year "clLY" = upper one-sided 95% confidence limit on fitted value in last monitoring year "EQS" = Threshold value "EQSdiff" = difference between clLY and EQS "EQSbelow" = whether the mean value in the last monitoring year is significantly below EQS

This core indicator evaluates the average chlorophyll-a concentration in surface water (0 – 10 m) during summer (June – September) during the assessment period 2011-2016. The measured average chlorophyll-a is a combined estimate of two types of data: 1) in-situ measurements from oceanographic monitoring data (surface water 0-10 m) and 2) earth observation data. More detailed description on methodology can be found at HELCOM Core indicator report and http://www.helcom.fi/Documents/Eutrophication%20assessment%20manual.pdf This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 open sea sub-basins and division of coastal areas to WFD water types or water bodies). The open sea areas have been assessed based on HELCOM Monitoring data and earth observation data for year 2011 (ENVISAT/MERIS instrument observations with FUB bio-optical model). Results for coastal areas are based on national WFD results. Attribute information: "HELCOM_ID" = Code of the HELCOM scale 4 assessment unit "Country" = Country/ Opensea "level_2" = name of the subbasin "level_4" = Name of the HELCOM scale 4 assessment unit "Area (km2)" = Area of the HELCOM scale 4 assessment unit "Indicator" = Name of indicator “Season” = Season of the indicator (Summer = June-September) “Period” = Assessment period (20112016 = 2011 – 2016) Indicator value (ES) = Indicator value calculated for the assessment unit "Standard deviation (STD)" = Standard deviation of data used for calculating ES "Number of samples " = Number of samples by assessment unit "Theshold value (ET)" = Commonly agreed thershold value "Ratio between ES and ET (ER)" = Eutrophication ratio: Ratio between ES and ET (in case of indicator with positive response to eutrophication) "ES_SCORE” = Confidence based on the data used for calculating ES "ET_SCORE” = Confidence of target-setting procedure "I_SCORE” = Confidence (%) = average of ES-Score and ET-Score "Indicator Weight" = Indicator Weight in integrated eutrophication assessment “Status” = Status of the indicator (“Good”, “Not good”, “Not assessed” or "Not applicable") “Confidence” = Confidence of result based on I-SCORE (“High”, “Moderate” or “Low”) "AULEVEL" = Assessment unit level used for the indicator

This core indicator evaluates the status of abundance of breeding waterbirds in the Baltic Sea region. The breeding waterbirds are considered to reflect good status when at least 75% of the considered species deviate less than 30% downwards (species laying more than one egg per year) or 20% downwards (species laying one egg per year) from the baseline condition during the reference period 1991-2000. This dataset displays the result of the indicator in HELCOM Assessment Scale 1 (Whole Baltic Sea). Attribute information: "Status" = Status of the indicator (“Achieve”, “Fail” or “Not assessed”) "AULEVEL" = Assessment unit level used for the indicator "level_1" = Name of HELCOM scale 1 assessment unit "Common Shelduck" = Results for common shelduck "Eurasian Oystercatcher" = Results for Eurasian oystercatcher "Pied Avocet" = Results for pied avocet "Ringed Plover" = Results for ringed plover "Turnstone" = Results for turnstone "Dunlin" = Results for dunlin "Arctic Skua" = Results for Arctic skua "Common Gull" = Results for common gull "Herrin Gull" = Results for herring gull "Lesser black-backed gull" = Results for lesser black-backed gull "Little Tern" = Results for little tern "Caspian Tern" = Results for Caspian tern "Arctic Tern" = Results for Arctic tern "Goosander" = Results for goosander "Red-breasted Merganser" = Results for red-breasted merganser "Great crested grebe" = Results for great crested grebe "Great Cormorant" = Results for great cormorant "Razorbill" = Results for razorbill "Common Guillemot" = Results for common guillemot "Black Guillemot" = Results for black guillemot "Tufted Duck" = Results for tufted duck "Common Eider" = Results for common eider "Velvet Scoter" = Results for velvet scoter "Mute Swan" = Results for mute swan "Graylag Goose" = Results for greylag goose "Great black-backed Gull" = Results for great black-backed gull "Sandwich Tern" = Results for sandwich tern "Greater Scaup" = Results for greater scaup

This dataset represents the underlying data on core indicator 'Reproductive disorders: malformed embryos of amphipods 2018'. The core indicator evaluates the status of the marine environment based on the presence of hazardous substances in the bottom sediments. The rate of embryo malformations indicates reproductive toxicity due to the presence of hazardous substances in the bottom sediments. The threshold value has not been achieved on all stations within each basin indicating that toxic effects of contaminants may be present. The variability of the malformation rate is much greater within a basin than between the Bothnian Sea and the Baltic proper. This dataset displays the result of the indicator in HELCOM Assessment Scale 2 (Division of the Baltic Sea into 17 sub-basins). Attribute information: "YEAR" = Year of sampling "Basin" = Subbasin abbreviation "REGION" = Region code within the Baltic Sea "STATN" = Station "Lat_WGS84d" = latitude coordinate of station "Lon_WGS84d" = longitude coordinate of station "TotalEmbry" = Total embryos "UNDIFFiren" = Undifferentiated "MALFORmed" = Malformed "MEMBraneDa" = Membrane damage "FemalesWME" = Females with malformed embryos "NofFemales" = Number of Females "AveFecundi" = Average Fecundity "STN" = "FFemWAE" = Frequency Females with aberrated embryos "FreqAberrE" = Frequency Aberrant Embryos "inGES_Fem" = inGES (Females) "inGES_Emb" = inGES (Embryos) "inGES_Over" = inGES (overall)

This dataset represents the underlying data on core indicator Abundance of coastal fish key functional groups. The core indicator evaluates the abundance of selected functional groups of coastal fish in the Baltic Sea. Quantitative thresholds are used to evaluate if core indicators status is Good, Not good or Not assessed. As a rule, good status is achieved when the abundance of piscivores (i.e. fish that feed on other fish) is above a site-specific threshold value, and the abundance of cyprinids or mesopredators (i.e. mid trophic-level fish) is within an acceptable range for the specific site. The status of functional groups of coastal fish in the Baltic Sea has been evaluated by assessing the status of piscivores and cyprinids/mesopredators during the period 2011-2016. This dataset displays the result of the indicator in HELCOM Assessment Scale 3 (Division of the Baltic Sea into 17 sub-basins and further division into coastal and offshore areas). Attribute information: "COUNTRYID" = Country code "ORGANIZATI" = Data provider "AREANAME" = ICES area name "ASSESSMENT" = Name of scale 3 HELCOM assessment unit "IndicatorI" = Indicator name (abbreviation) "Functional" = Functional group "IndicatorV" = Result value for the indicator "MethodId" = Catch method "GearType_N" = Gear type of catch "Season_NAM" = Season

The assessment results for waterbirds for the HELCOM Third Holistic Assessment of the Ecosystem Health of the Baltic Sea (HOLAS 3) contains the following datasets: Overall seal integrated result map, Grey seal integrated result map, Ringed seal integrated result map, Harbour seal integrated result map, and Harbour porpoise integrated result map. Status is shown in five categories based on the integrated assessment scores obtained in the tool. Biological Quality Ratios (BQR) above 0.6 correspond to good status. The datasets were created using the BEAT tool. https://github.com/helcomsecretariat/BEAT Attribute information: "Mammals_ag" = Aggregated area "SAULEVEL" = spatial assessment unit ID in which the assessment status took place "ECID" = Ecosystem component ID "EClevel" = Ecosystem Component level "EcosystemComponent" = Ecosystem component assessed "BQR" = Biological Quality Ratio "Conf" = Confidence of the assessment (0-1, higher values mean higher confidence) "ConfClass" = Confidence class

This dataset represents the aggregated results for pelagic habitat indicators from eutrophication assessment (Chlorophyll-a and Water Clarity). The dataset was created in order to update the information for the integrated assessment under HOLAS 3. MEAN_EQRS_PelagicIntegration_NEW=Mean of Chrolophyll-a and Water clarity indicator MEAN_EQRS_CPHL=Mean EQRS of Chlorophyll-a Clarity indicator 2016-2021 MEAN_EQRS_SECC=Mean EQRS of Water Clarity indicator 2016-2021 Status=Status of Assessment unit based on mean of Chrolophyll-a and Water clarity indicator (Good, Moderate, Poor, Bad, Not assessed)

This indicator evaluates the eutrophication status of the Baltic Sea area based on annual total nitrogen concentration. The measured average total nitrogen is derived from in-situ measurements from oceanographic monitoring data for 2011-2016 (µmol/l), surface water (0-10 m). More detailed description on methodology can be found at http://www.helcom.fi/baltic-sea-trends/indicators/total-nitrogen-(tn)/ and http://www.helcom.fi/Documents/Eutrophication%20assessment%20manual.pdf This dataset displays the result of the indicator in HELCOM Assessment Scale 4 (Division of the Baltic Sea into 17 open sea sub-basins and division of coastal areas to WFD water types or water bodies). The open sea areas have been assessed based on HELCOM Monitoring data and results for coastal areas are based on national WFD results. Some of the open sea areas have not been assessed due to lack of commonly agreed threshold value. Attribute information: “HELCOM_ID” = Code of the HELCOM scale 4 assessment unit "Country" = Country/ Opensea "level_2" = Name of the HELCOM scale 2 assessment unit "Name" = Name of the HELCOM scale 4 assessment unit” "Area (km2)" = Area of the HELCOM scale 2 assessment unit "Indicator" = Name of indicator “Season” = Season of the indicator “Period” = Assessment unit period (20112016 = 2011 – 2016) "Indicator value (ES)" = Indicator value calculated for the assessment unit "Standard deviation (STD)" = Standard deviation of data used for calculating ES "Number of samples " = Number of samples per assessment unit "Thershold value (ET)" = Commonly agreed thershold value "Ratio between ES and ET (ER)" = Ratio between ES and ET (in case of indicator with positive response to eutrophication) "ES_SCORE” = Confidence based on the data used for calculating ES "ET_SCORE” = Confidence of target-setting procedure "I_SCORE” = Confidence (%) = average of ES-Score and ET-Score "Indicator Weight" = Indicator Weight in integrated eutrophication assessment “Status” = Status of the indicator (“Good”, “Not good”, “Not assessed” or "Not applicable") “Confidence” = Confidence of result based on I-SCORE (“High”, “Moderate” or “Low”) "AULEVEL" = Assessment unit level used for the indicator "ET_wint" = Commonly agreed thershold value in winter "ER_winter" = Ratio between ES and ET (in case of indicator with positive response to eutrophication) in winter "Winter status" = Status of the indicator (“Achieve”, “Fail” or “Not assessed”) in winter