Physical loss pressure layer combines all human activities that cause physical loss of seabed. The pressure is given as area lost in each cell (km2). For the polygon datasets the area was assumed to be the lost area. For line and point datasets spatial extents were calculated with buffers (below in brackets). If no buffer extent is indicated, the data was reported as polygon. The human activities used for the physical loss pressure: - Bridges (2 m) - Cables (operational; 1,5 m) - Coastal defence and flood protection (area of polygon, 50 m for lines) - Dredging (capital dredging, Area of polygon or a 25/50 m buffer for <5000 m3 / >5000m3 points) - Extraction of sand and gravel - Finfish mariculture (150 m) - Harbours (polygon with 200 m buffer) - Land claim (area of polygon, 30m buffer for lines) - Marinas and leisure harbours (200 m) - Oil platforms (25 m) - Oil terminals and refineries (200 m) - Pipelines (operational; 15 m) - Shellfish mariculture (area of polygon, 150 m points) - Watercourse modification (50 m) - Wind turbines (operational; 30m point location of turbine) The datasets were first processed separately covering the whole Baltic Sea and then merged into one uniform data layer and minimizing the effect of overlapping areas. Polygon areas were clipped with coastline to remove buffered areas that reached to land.

Broad-scale habitat maps for the Baltic Sea have been produced in the EUSeaMap project in 2016. For German and Estonian marine areas, national (more accurate) datasets were used. German data included both substrate and light information (division into infralittoral/circalittoral). Estonian data included only substrate and the division into light regimes was obtained from the EuSeaMap data. Here, the habitat class “infralittoral mud” includes classes “Fine mud”, “Mud to sandy mud” and “Sandy mud” of the original data, in the infralittoral zone. The original polygon maps have been converted to 1 km x 1km grid. The scale of the substrate data used in broad-scale habitat maps varies from 1:250 000 to 1:1M (data from EMODnet Geology). Coarser resolution data has been used in areas, where 1: 250 000 substrate data has not been available. Due to different scales used, the habitat classes may show different sized patterns in different areas.

Distribution of Furcellaria lumbricalis based on data submission by HELCOM contracting parties. Mainly pointwise occurrences of Furcellaria were submitted, originally gathered in national mapping and monitoring campaigns, or for scientific research purposes. From Estonian waters, a predictive model was used (200m resolution), that was converted to presence/absence using minimized difference threshold (MDT) criteria. For Poland, only confirmed occurrence of Furcellaria were included (Slupsk bansk, Rowy reef and reef at Orlowo cliff). All data (Furcellaria points and the raster presenting predicted presence of Furcellaria) were generalized to 5km x 5km grid cells.

Potential effect of continuous noise to mobile species assesses the cumulative potential effect of continuous noise on mobile species and their presence in the HELCOM area. The evaluation is based on the pressure layer on input of continuous noise, combined with information on the distribution of 15 mobile species and their habitats. The thematic analyses on the potential effect of continuous noise to mobile species is calculated for each assessment unit (1 km2 grid cells) and the data set covers the time period 2016-2021. Spatial Pressure and Impact Assessment (SPIA) is the framework for assessing spatial and cumulative pressures and impacts in HOLAS 3, and this analyses present a thematic assessment including only a certain subset of layers. The framework also includes results for the Baltic Sea Impact Index (full cumulative impact assessment), Baltic Sea Pressure Index (full cumulative pressure assessment), and other thematic assessments where a subset of pressure and ecosystem layers are used. For more info please - visit the HOLAS 3 website (http://stateofthebalticsea.helcom.fi/) - download the report thematic assessment of spatial distribution of pressures and impacts 2016-2021 (https://helcom.fi/post_type_publ/holas3_spa) - or check out the HELCOM SPIA online tool to make calculations for any desired combination of pressures and ecosystem layers (https://maps.helcom.fi/website/bsii/). Please scroll down to "Lineage" for a more detailed description of the methodology.

Potential cumulative impacts of eutrophication and hazardous substances assesses the cumulative potential effect of eutrophication and hazardous substances over all ecosystem components. The evaluation is based on the pressure layer on eutrophication and hazardous substances, combined with information on all ecosystem components (57 layers) included in SPIA for HOLAS 3. The thematic analyses is calculated for each assessment unit (1 km2 grid cells) and the data set covers the time period 2016-2021. Spatial Pressure and Impact Assessment (SPIA) is the framework for assessing spatial and cumulative pressures and impacts in HOLAS 3, and this analyses present a thematic assessment including only a certain subset of layers. The framework also includes results for the Baltic Sea Impact Index (full cumulative impact assessment), Baltic Sea Pressure Index (full cumulative pressure assessment), and other thematic assessments where a subset of pressure and ecosystem layers are used. For more info please - visit the HOLAS 3 website (http://stateofthebalticsea.helcom.fi/) - download the report thematic assessment of spatial distribution of pressures and impacts 2016-2021 (https://helcom.fi/post_type_publ/holas3_spa) - or check out the HELCOM SPIA online tool to make calculations for any desired combination of pressures and ecosystem layers (https://maps.helcom.fi/website/bsii/). Please scroll down to "Lineage" for a more detailed description of the methodology.

The occurrence of suitable nursery habitats is crucial for maintaining fish populations (Sundblad et al. 2013). For perch, species distribution modelling studies (Snickars et al. 2010, Bergström et al. 2013, Sundblad et al. 2013) have shown the importance of suitable environmental conditions for reproduction. Due to lack of coherent data on perch spawning and nursery areas across the Baltic Sea countries, environmental variables were used in delineating potential recruitment areas for perch. The distribution area or perch recruitment is delineated by selecting areas where depth < 4 m (For Danish waters < 3 m), logged exposure < 5 (exposure model described in Isæus 2004), and salinity < 10 PSU. The threshold values have been obtained from literature (Snickars et al. 2010, Bergström et al. 2013, Skovrind et al. 2013, Sundblad et al. 2013). Relatively “loose” thresholds have been used, to rather overestimate than underestimate the recruitment area (precautionary approach). Along the Finnish coastline a national model has been used (Kallasvuo et al. 2016), with suitable environments for perch recruitment generalized to 1 km x 1 km grid.

The map of sprat relative abundance is mainly based on Baltic International acoustic surveys (BIAS), years 2011-2016, (ICES WGBIFS reports), reported as millions of sprat per ICES rectangle. The BIAS surveys cover almost the whole area where sprat is commonly encountered. Outside BIAS area, sprat landings data was used to complement the data. For ICES rectangles surveyed by BIAS, values shown are the mean values per ICES rectangle based on BIAS data, average for 2011-2016. For ICES rectangles not surveyed by BIAS, values are calculated as: MAX-value x Weighting factor. The weighting factor is specific to each ICES rectangle, calculated as the ratio between the commercial landings in that rectangle and the commercial landings in the ICES rectangle with highest landings (based on averages for 2011-2015). MAX-value = millions of sprat according to BIAS in the ICES rectangle with highest landings. ICES rectangles outside the BIAS survey area with no reported sprat landings were given the value 0. The abundance values / ICES rectangle were divided by the area of the rectangle to obtain values per 1km2, and then converted to 1 km x 1km grid cells. Values were first log transformed and then normalised.

This map shows the distribution and abundance of harbour seals across the Baltic Sea. The map was originally created for HELCOM Red list assessment of the Baltic Sea, using seal expert consultation. For the Baltic Sea Impact Index, the map was modified to represent four abundance classes, based on expert consultation. The map has been updated from the 1st version of HOLASII, based on expert consultation (HELCOM Seal EG).

The map of herring relative abundance is mainly based on Baltic International acoustic surveys (BIAS), years 2011-2016 (ICES WGBIFS reports), reported as millions of herring / ICES rectangle. Also herring landings data were used to complement the data. For ICES rectangles surveyed by BIAS, values shown are the mean values per ICES rectangle based on BIAS data, average for 2011-2016. For ICES rectangles not surveyed by BIAS, values are calculated as: MAX-value x Weighting factor. The weighting factor is specific to each ICES rectangle, calculated as the ratio between the commercial landings in that rectangle and the commercial landings in the ICES rectangle with highest landings (based on averages for 2011-2016). MAX-value = millions of herring according to BIAS in the ICES rectangle with highest landings. ICES rectangles outside the BIAS survey area with no reported herring landings were given the value 0. The relative abundance values in each ICES rectangle were divided by the area of the rectangle to obtain values per 1km2. If the values in small coastal ICES rectangles (outside BIAS area) became unrealistically large due to high herring landings, the value of the neighboring rectangle was given. The final layer was converted to 1 km x 1km grid cells. Values were first log transformed and normalized.

Input of impulsive anthropogenic sound includes impulsive events from 2011-2016 • Seismic surveys (HELCOM-OSPAR Registry; national data call submissions as lines in the folder of data) • Explosions (HELCOM-OSPAR Registry) • Pile driving (HELCOM-OSPAR Registry) • Airguns (HELCOM-OSPAR Registry) For the different event types, numeric intensity value was used to represent the pressure as categorized in HELCOM-OSPAR Impulsive noise registry. All nationally reported seismic surveys were given intensity values “Very low” (0.25) - Very low (0.25) - Low (0.5) - Medium (0.75) - High (1) The impact distance has not been taken into account due to the different nature of separate datasets used for the pressure layer. We acknowledge that e.g. pile driving and airguns may impact up to 20 km from the source event. The spread of the sound wave depends on the sound frequency, water salinity, temperature and density.