Broad-scale habitat maps for the Baltic Sea have been produced in the EUSeaMap project in 2016. For German and Estonian marine areas, national (more accurate) datasets were used. German data included both substrate and light information (division into infralittoral/circalittoral). Estonian data included only substrate and the division into light regimes was obtained from the EuSeaMap data. Here, the habitat class “infralittoral hard substrate” includes classes “Rock and other hard substrate” and “Coarse substrate” of the original data, in the infralittoral zone. The original polygon maps have been converted to 1 km x 1 km grid. The scale of the substrate data used in broad-scale habitat maps varies from 1:250 000 to 1:1M (data from EMODnet Geology). Coarser resolution data has been used in areas, where 1: 250 000 substrate data has not been available. Due to different scales used, the habitat classes may show different sized patterns in different areas.

Distribution of Charophytes (Chara spp., Nitella spp., Nitellopsis spp., Tolypella spp.) mainly based on data submission by HELCOM contracting parties. Submitted point data was originally gathered in national mapping and monitoring campaigns, or for scientific research. Also scientific publications were used to complement the data (in Curonian, Vistula and Szczechin lagoons, see reference list). Polygon data from Poland was digitized based on Polish Marine Atlas. From Estonian waters, a predictive model was used (200m resolution), that was converted to presence/absence using minimized difference threshold (MDT) criteria. All data (points, polygon and the raster presenting predicted presence of Charophytes) were generalized to 5km x 5km grid cells.

This dataset is built from following Human activities datasets: • http://metadata.helcom.fi/geonetwork/srv/eng/catalog.search#/metadata/81c917ea-492d-48e2-9f00-e1bb7fe3e4fc • http://metadata.helcom.fi/geonetwork/srv/eng/catalog.search#/metadata/4fcd51dd-b8be-4e83-8cad-37c566782e8f The game hunting of seabirds data (see separate metadata): The total number of hunted seabirds were averaged over 2011-2015 (number of hunted seabirds / year). The area of the reporting unit was used to calculate the number of hunted seabirds / km2 and the data was converted to 1km x 1km grid. The predator control of seabirds data (see separate metadata): The total number of hunted cormorants were averaged over 2011-2015 (number of hunted cormorants / year). The area of the reporting unit was used to calculate the number of hunted cormorants / km2 and the data was converted to 1km x 1km grid. The two datasets were first separately log transformed and then summed, to get the total value for each grid cell. Zero values were given to all grid cells with no reported seabird hunting activity. The layer was normalized.

Broad-scale habitat maps for the Baltic Sea have been produced in the EUSeaMap project in 2016. For German and Estonian marine areas, national (more accurate) datasets were used. German data included both substrate and light information (division into infralittoral/circalittoral). Estonian data included only substrate and the division into light regimes was obtained from the EuSeaMap data. Here, the habitat class “circalittoral hard substrate” includes classes “Rock and other hard substrate” and “Coarse substrate” of the original data, in the circalittoral zone. The original polygon maps have been converted to 1 km x 1 km grid. The scale of the substrate data used in broad-scale habitat maps varies from 1:250 000 to 1:1M (data from EMODnet Geology). Coarser resolution data has been used in areas, where 1: 250 000 substrate data has not been available. Due to different scales used, the habitat classes may show different sized patterns in different areas.

Broad-scale habitat maps for the Baltic Sea have been produced in the EUSeaMap project in 2016. For German and Estonian marine areas, national (more accurate) datasets were used. German data included both substrate and light information (division into infralittoral/circalittoral). Estonian data included only substrate and the division into light regimes was obtained from the EuSeaMap data. Here, the habitat class “circalittoral sand includes classes “Sand” and “Muddy sand” of the original data, in the circalittoral zone. The original polygon maps have been converted to 1 km x 1km grid. The scale of the substrate data used in broad-scale habitat maps varies from 1:250 000 to 1:1M (data from EMODnet Geology). Coarser resolution data has been used in areas, where 1: 250 000 substrate data has not been available. Due to different scales used, the habitat classes may show different sized patterns in different areas.

'Availability of deep water habitat, based on occurrence of H2S' layer describes the suitability of the bottom areas for the Baltic Sea biota, with regard to oxygen conditions of the near bottom waters. The data used to produce the layer was received from Leibniz-Institut für Ostseeforschung Warnemünde (IOW): - areas (polygons) with hydrogen sulfide (H2S) based on point measurements and modelling. Five time periods / year, for years 2011-2016 (altogether 30 layers). The polygons were converted to raster layers in a way, that for each time period (6 years, 5 time periods each year), areas with H2S got a value 0, other areas got the value 1. All layers were summed, (representing 6 years, 5 time periods each year, maximum value 30) and data was normalised. For more detailed information on the data used, please see Feistel et al. 2016.

Concentration of phosphorus pressure layer is interpolated from annual seasonal average of total phosphorus measurements from surface waters (0-10 m) extracted from ICES’s oceanographic database, database of Swedish Meteorological and Hydrological Institute, EEA’s Eionet database and Data from Gulf of Finland year 2014. The points were interpolated to cover the entire Baltic Sea with Spline with barriers interpolation method. Values were log-transformed and normalised (more detailed description below).

Reefs (according to Habitats Directive Annex I) are hard compact substrata (either biogenic or geogenic) on solid and soft bottoms, which arise from the seafloor in the sublittoral and littoral zone. Distribution of mapped Natura 2000 habitat “Reefs” based on data submission by HELCOM contracting parties. Most of the submitted data is based on modelling and limited ground-truthing. Data coverage, accuracy and the methods in obtaining the data vary between countries.

The pressure layer represents biological pressure caused by introduction of non-indigenous species. The data is obtained from core indicator Trend in the arrival of new non-indigenous species (BSEP 129b: http://www.helcom.fi/Lists/Publications/BSEP129B.pdf). For the Baltic Sea Impact Index, the layer was normalized.

Estuaries (according to Habitats Directive Annex I) are coastal inlets that are strongly influenced by freshwater. The distribution map is based on data submission by HELCOM contracting parties. Most of the submitted data is based on modelling, GIS analysis and/or aerial photos. Data coverage, accuracy and the methods in obtaining the data vary between countries.