The map of sprat relative abundance is mainly based on Baltic International acoustic surveys (BIAS), years 2011-2016, (ICES WGBIFS reports), reported as millions of sprat per ICES rectangle. The BIAS surveys cover almost the whole area where sprat is commonly encountered. Outside BIAS area, sprat landings data was used to complement the data. For ICES rectangles surveyed by BIAS, values shown are the mean values per ICES rectangle based on BIAS data, average for 2011-2016. For ICES rectangles not surveyed by BIAS, values are calculated as: MAX-value x Weighting factor. The weighting factor is specific to each ICES rectangle, calculated as the ratio between the commercial landings in that rectangle and the commercial landings in the ICES rectangle with highest landings (based on averages for 2011-2015). MAX-value = millions of sprat according to BIAS in the ICES rectangle with highest landings. ICES rectangles outside the BIAS survey area with no reported sprat landings were given the value 0. The abundance values / ICES rectangle were divided by the area of the rectangle to obtain values per 1km2, and then converted to 1 km x 1km grid cells. Values were first log transformed and then normalised.

The extraction of cod pressure layer is based on two datasets: 1. http://metadata.helcom.fi/geonetwork/srv/eng/catalog.search#/metadata/7a1389b3-382a-487f-8888-ac45c94c5a97 for years 2011-2016 reported per ICES statistical rectangles (tonnes / ICES rectangle). 2. http://metadata.helcom.fi/geonetwork/srv/eng/catalog.search#/metadata/debeafcd-948b-4455-88ae-7a3d1618f5a8 from ICES recreational fisheries reports for 2011-2016, reported per country (only coastal areas included). Landing values were redistributed within each ICES rectangle by the c-square fishing effort data provided by ICES (all gears, 2011-2013). Tonnes / km² were calculated for both data sets and the results were converted to 1 km x 1 km grid cells. The layers were summed together, log-transformed and normalised to produce the final pressure layer on extraction of cod. Please see "lineage" section below for further details on attributes, data source, data processing, etc.

This map shows the distribution and abundance of harbour seals across the Baltic Sea. The map was originally created for HELCOM Red list assessment of the Baltic Sea, using seal expert consultation. For the Baltic Sea Impact Index, the map was modified to represent four abundance classes, based on expert consultation. The map has been updated from the 1st version of HOLASII, based on expert consultation (HELCOM Seal EG).

Distribution of eelgrass based on data submission by HELCOM contracting parties. Mainly pointwise occurrences of eelgrass were submitted, originally gathered in national mapping and monitoring campaigns, or for scientific research. Polygon data from Puck Bay (Poland) was digitized based on Polish Marine Atlas and Orlowo cliff area was added based on expert knowledge. From Estonian waters, a predictive model was used (200m resolution), that was converted to presence/absence using minimized difference threshold (MDT) criteria. All data (points, polygon and the raster presenting predicted presence of eelgrass in the Estonian waters) were generalized to 5km x 5km grid cells.

Input of impulsive anthropogenic sound includes impulsive events from 2011-2016 • Seismic surveys (HELCOM-OSPAR Registry; national data call submissions as lines in the folder of data) • Explosions (HELCOM-OSPAR Registry) • Pile driving (HELCOM-OSPAR Registry) • Airguns (HELCOM-OSPAR Registry) For the different event types, numeric intensity value was used to represent the pressure as categorized in HELCOM-OSPAR Impulsive noise registry. All nationally reported seismic surveys were given intensity values “Very low” (0.25) - Very low (0.25) - Low (0.5) - Medium (0.75) - High (1) The impact distance has not been taken into account due to the different nature of separate datasets used for the pressure layer. We acknowledge that e.g. pile driving and airguns may impact up to 20 km from the source event. The spread of the sound wave depends on the sound frequency, water salinity, temperature and density.

Distribution of blue mussel based on data submission by HELCOM contracting parties. Mainly pointwise occurrences of Mytilus spp. were submitted, originally gathered in national mapping and monitoring campaigns, or for scientific research. Point data from Poland was digitized based on Polish Marine Atlas. From Lithuania, a polygon delineating reefs was used to present Mytilus occurrence. For Germany, point data was complemented with a model describing Mytilus biomass in the German marine area (Darr et al. 2014), where predicted biomasses > 1g dw/ m2 were included as presence. From Estonian waters, a predictive model was used (200m resolution), that was converted to presence/absence using minimized difference threshold (MDT) criteria. All data (points, polygon and the raster presenting predicted presence of Mytilus) were generalized to 5km x 5km grid cells.

Physical loss pressure layer combines all human activities that cause physical loss of seabed. The pressure is given as area lost in each cell (km2). For the polygon datasets the area was assumed to be the lost area. For line and point datasets spatial extents were calculated with buffers (below in brackets). If no buffer extent is indicated, the data was reported as polygon. The human activities used for the physical loss pressure: - Bridges (2 m) - Cables (operational; 1,5 m) - Coastal defence and flood protection (area of polygon, 50 m for lines) - Dredging (capital dredging, Area of polygon or a 25/50 m buffer for <5000 m3 / >5000m3 points) - Extraction of sand and gravel - Finfish mariculture (150 m) - Harbours (polygon with 200 m buffer) - Land claim (area of polygon, 30m buffer for lines) - Marinas and leisure harbours (200 m) - Oil platforms (25 m) - Oil terminals and refineries (200 m) - Pipelines (operational; 15 m) - Shellfish mariculture (area of polygon, 150 m points) - Watercourse modification (50 m) - Wind turbines (operational; 30m point location of turbine) The datasets were first processed separately covering the whole Baltic Sea and then merged into one uniform data layer and minimizing the effect of overlapping areas. Polygon areas were clipped with coastline to remove buffered areas that reached to land.

This map presents the Special Protection Areas (SPAs) with reported wintering areas for birds. The spatial data on SPAs were gathered from the HELCOM contracting parties by Lund University, Sweden. In the data, the countries also indicated whether the sites were designated mainly due to wintering or breeding birds in the area. For Denmark, the information was obtained from standard forms for Natura 2000 sites. For Denmark, the data was updated after review process 20 February 2017. For Germany, the areas that were reported as “NA”(=information not available) were included in both breeding and wintering area maps. Many of the SPAs are both wintering and breeding areas. For the Baltic Sea Impact Index, the data was converted to 1 km x 1km grid cells.

The occurrence of suitable nursery habitats is crucial for maintaining fish populations (Sundblad et al. 2013). Species distribution modelling studies have shown the importance of suitable environmental conditions for pikeperch recruitment. Due to lack of coherent data on pikeperch spawning and nursery areas across the Baltic Sea countries, environmental variables were used in delineating potential recruitment areas for pikeperch. The pikeperch recruitment area presented on the map is mainly delineated by selecting areas where depth < 5 m, logged exposure < 5, salinity < 7 PSU, Secchi depth < 2 m and distance to deep (10m) water < 4km. The threshold values have been obtained from literature (Veneranta et al. 2011, Bergström et al. 2013, Sundblad et al. 2013, Kallasvuo et al. 2016). Temperature, although important for pikeperch, was left out due to high variation in timing of suitable spawning temperatures across the Baltic Sea. In Finnish coastal waters, a national pikeperch model (Kallasvuo et al. 2016) has been used, with very suitable areas for pikeperch generalized to 1 km grid. In Sweden, the areas delineated by environmental variables have been complemented with information from national interview survey (Gunnartz et al. 2011) as well as expert opinion.

Broad-scale habitat maps for the Baltic Sea have been produced in the EUSeaMap project in 2016. For German and Estonian marine areas, national (more accurate) datasets were used. German data included both substrate and light information (division into infralittoral/circalittoral). Estonian data included only substrate and the division into light regimes was obtained from the EuSeaMap data. Here, the habitat class “infralittoral sand” includes classes “Sand” and “Muddy sand” of the original data, in the infralittoral zone. The original polygon maps have been converted to 1 km x 1km grid. The scale of the substrate data used in broad-scale habitat maps varies from 1:250 000 to 1:1M (data from EMODnet Geology). Coarser resolution data has been used in areas, where 1: 250 000 substrate data has not been available. Due to different scales used, the habitat classes may show different sized patterns in different areas.