Broad-scale habitat maps for the Baltic Sea have been produced in the EUSeaMap project in 2016. For German and Estonian marine areas, national (more accurate) datasets were used. German data included both substrate and light information (division into infralittoral/circalittoral). Estonian data included only substrate and the division into light regimes was obtained from the EuSeaMap data. Here, the habitat class “infralittoral mud” includes classes “Fine mud”, “Mud to sandy mud” and “Sandy mud” of the original data, in the infralittoral zone. The original polygon maps have been converted to 1 km x 1km grid. The scale of the substrate data used in broad-scale habitat maps varies from 1:250 000 to 1:1M (data from EMODnet Geology). Coarser resolution data has been used in areas, where 1: 250 000 substrate data has not been available. Due to different scales used, the habitat classes may show different sized patterns in different areas.

Springtime Chl-a concentration is here used as a proxy for productive surface waters. In the Baltic Sea Impact Index (BSII), areas with high springtime phytoplankton production will be given higher importance, as they are considered important areas for the Baltic Sea food web. In the current map, mean of springtime maximum weekly values (weeks 12-22, years 2003-2011) Chl-a concentration of the surface waters has been used, derived from satellite data (MERIS). Years 2003-2011 have been used, as there is no MERIS data available for years 2012-2016. The data for eastern Baltic Sea is provided by the Finnish Environment Institute (~300m resolution). Outside this high resolution data, MERIS-data downloaded from JRC-database has been used (~4 km resolution, to calculate average of maximum monthly values for April or May for 2003-2011). Both datasets were converted to 1 km x 1 km grid cells.

Large shallow inlets bays (according to Habitats Directive Annex I) are large, shallow indentations of the coast, sheltered from wave action and where, in contrast to estuaries, the influence of freshwater is generally limited. The distribution map is based on data submission by HELCOM contracting parties. Most of the submitted data is based on GIS analysis and modelling, but also field inventories and ground-truthing has been carried out in some areas. Data coverage, accuracy and the methods in obtaining the data vary between countries.

Introduction of radionuclides is based on HELCOM MORS Discharge data from 2011 to 2014. The isotopes taken into account were: Cesium-137, Strontium-90, and Cobalt-60. The decay-corrected annual average of the sum of the radionuclide discharges (in Bq) were calculated for the pressure. 10 km buffer with linear decreasing function was used to represent the impact distance from the nuclear power plant outlets.

This map presents the Special Protection Areas (SPAs) with reported breeding areas for birds. The spatial data on Special Protection Areas were gathered from the HELCOM contracting parties by Lund University, Sweden. In the data, the countries also indicated whether the sites were designated mainly due to wintering or breeding birds in the area. For Denmark, the information was obtained from standard forms for Natura 2000 sites. For Denmark, the data was updated after review process 20 February 2017. For Germany, the areas that were reported as “NA”(=information not available) were included in both breeding and wintering area maps. Many of the SPAs are both wintering and breeding areas. For the Baltic Sea Impact Index, the data was converted to 1 km x 1km grid cells.

Pressure layer combines all human activities that cause changes to hydrological conditions. The human activities were presented as point data which were given spatial extents (given below). The pressure value was given as the proportion of the grid cell under the pressure. The following human activities were combined into the changes to hydrological conditions layer; - Hydropower dams (a 1km2 grid cell in the river estuary was selected) - Water course modification (1 km) - Wind turbines (operational, 0.3 km, linear decline) - Oil platforms (0.5 km, linear decline) The human activity datasets were first processed separately covering the whole Baltic Sea and then summed together and overlapping areas were dissolved to remove double counting. Attenuation gradients are assigned to each layer as described above. Area effected decreases when distance from avtivity increases. Layer was normalized.

Boreal Baltic islets and small islands (according to Habitats Directive Annex I) are groups of skerries, islets or single small islands, mainly in the outer archipelago or offshore areas. They are important nesting sites for birds and resting sites for seals. The surrounding sublittoral vegetation is also included. The distribution map is based on data submission by HELCOM contracting parties. Only Sweden and Finland reported occurrences of boreal Baltic islets and small islands.

Distribution of Fucus sp. based on data submission by HELCOM contracting parties. Mainly pointwise occurrences of Fucus were submitted, originally gathered in national mapping and monitoring campaigns, or for scientific research purposes. From Estonian waters, a predictive model was used (200m resolution), that was converted to presence/absence using minimized difference threshold (MDT) criteria. All data (Fucus points and the raster presenting predicted presence of Fucus) were generalized to 5km x 5km grid cells.

Summary Model results for the distribution of where at least 1% available light touches the seabed (the photic zone) and non-photic zone in the Baltic Sea based on 1% mean annual irradiance Description This dataset shows model results forthe distribution of where at least 1% available light touches the seabed (the photic zone) and non-photic zone in the Baltic Sea based on 1% mean annual irradiance. From an ecological point of view, available light is one of the primary physical parameters influencing and structuring the biological communities in the marine environment, as it is the driving force behind the primary production by providing the energy for the photosynthesis - energy that ultimately is transferred to other organisms not capable of photosynthesis. The depth of the photic zone is traditionally defined, for benthic plants, as the depth where 1% of the surface irradiance (as measured just below the water surface) is available for photosynthesis. Only two intervals based on light regime were used in the dataset, because they reflect the significant ecological difference between the shallow water depth with the presence of submerged aquatic vegetation, and the deeper waters where fauna (and bacteria) dominate diversity of species, abundance, and biomass. The intervals are: I. The photic zone (where at least 1% of the available light touches the seabed). II. The non-photic zone.The measurements of Secchi Depth used for producing this dataset are not evenly distributed and some areas in the Baltic Proper, Gulf of Riga and southern Baltic are not well covered.

Essential fish habitat (EFH) map on Potential spawning areas for sprat was prepared in PanBalticScope project (co-founded by the European Maritime and Fisheries Fund of the European Union) http://www.panbalticscope.eu/ Sprat (Sprattus sprattus) occurs in the entire Baltic Sea, and mainly in open sea areas. It is assessed as a single stock in the Baltic Sea within fisheries management. Sprat eggs are pelagic, and sprat spawning is well known from the deep basins in the central Baltic, where it typically occurs from February to August. Further north, spawning starts later in the year, and is less certain. Recent fisheries surveys indicate that sprat spawning does no longer occur in the Gulf of Finland. Sprat spawning areas were delineated using environmental variables due to lack of coherent field data across the Baltic Sea countries. “Potential sprat spawning areas” were delineated as areas with salinity > 6 and water depth > 30 m, but for the Arcona basin depth > 20 m was used (Grauman, 1980, Bauman et al. 2006, Voss et al. 2012). “High probability spawning areas” were delineated for areas deeper than 70 m. Stock: Sprat in subdivisions 22-32 (ICES) EFH type: Potential spawning areas Approach: Environmental envelope, corrected for areas 20-40 m south of Bornholm. Variables and thresholds: Potential spawning area: Depth > 30 m, Salinity > 6 (annual average) High probability spawning area: Depth >70 m, Salinity > 6 (annual average) Quality: The map is based on literature and environmental variables, not actual data on sprat spawning. The map might overestimate the spawning area west and north of Gotland. The data layers on environmental variables are based on modelling. Attribute information: Raster value representing no spawning (0), potential spawning area (0.5) and high probability spawning area (1). References: - Baumann, H, H Hinrichsen, C Mollmann, F Koster, A Malzahn, and A Temming (2006) Recruitment variability in Baltic Sea sprat (Sprattus sprattus) in tightly coupled to temperature and transport patterns affecting the larval and early juvenile stages. Canadian Journal of Fisheries and Aquatic Science 63:2191-2201 - Grauman GB (1980) Long term changes in the abundance data of eggs and larvae of sprat in the Baltic Sea. Fisheries research in the Baltic Sea, Riga. 15:138-150 (in Russian) - HELCOM (2018) Outcome of the regional expert workshop on essential fish habitats, organized by Pan Baltic Scope project and HELCOM (HELCOM Pan Baltic Scope EFH WS 1-2018) - Voss R, MA Peck, HH Hinrichsen, C Clemmesen, H Baumann, D Stepputis, M Bernreuther, JO Schmidt, A Temming, and FW Köster (2012) Recruitment processes in Baltic sprat - A re-evaluation of GLOBEC Germany hypotheses. Progress in Oceanography 107:61-79